Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2613 ATGTCTCAGCATTCCTCATCTTCGGTTGTTGCTCTTGCAATCAAGGGTGACAAGAAAAGCAAATATGTGGTACAGTGTGCACTTAATAAGTTTGTTCCAGAGGGAATGATTATTTTCAAGCTGATTCATGTCCATGCTGCAACTGCATTCAAAAAGGAAGTGGAGTGGCAAACAAATCAAATGCTTCTACCTTTCAAGATAATGTGTGAGCAAAGAAAGGTGCATGTGGATGTTGTAGTGATTGAATCAGATGATGTGGCAACTGCAGTAGCAGAGGAAGTAGCTAAGGGTGCCATAACCAAACTTGTTGTTGGAGCTTCATCTCACGGCTTATTTAAAAGTAAACAGAAAGGTATGTCTACGAAAATATCAGTATGCACACCAAGATTTTGTACAATTTATGCTATTTCAAAGGGAAAATTGTCCATACGCCCATCAGACATGCCGATTGGTGGAAGCATTATAGATGATGCCAGTGAAAGTGAAACCAGTTTGTCCACCAGCAGCTCATCTAACTACAACTCCACCTCTCAGACAGAATCTGCCTCTGTTTCATCATATGCTGGTTTACAATCCTCTTCGCTAACAACACAACGATTCCAAGCTCTTTCAAGTATAAATAGTGCTCTTCTAAGCACAAATCCAAGTTTTCCTGACACTAACCATTCTAGAGGCCAATCTCTAGATCTTGGGACAGAAAATACTGCTACAAGTTCTGCCAGAAACTCGGACATTGATCATGCCTTAAGTCGAGTCTCTAGTTGCAAAAGCTTTATTTCAGATACTGAATCTTGGATGTATGATCAAAATTCTAGCAAGGAAGTGCAACTAGAAACTACACTTCCATCACCTAATAGGCAGGCAAAATTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGACTGCATGCAGTAGCTCAAAGTGAGAAAATTGAAGCATCCCGAAAGCTAAATGAGCTAAGCAAGAGACGATCAGAAGAAACCATGAAAACTAAAGAGATTATTGCTAAGGAGGAGAAGGCAAAAGATCTAGCAAGACTAGAAAGAGATAAATATCAAGATGCATCAAGAGAAGCTGCATATTTGAAAGAATGTGCTGAAAGAGAAGCTGCAGAAAGGAAAGAAACAGAGTTGAAAGCCATTCTTGCTGCAAAAGAGACAAAAAAGCTGGAGGGTGCTCTAAGTGGTTCCACACCCCAGTACCGGAAGTTTGCCTGGGATGAAATAGTCTTAGCTACTTCATCTTTCTCTGAAGATCTGAAAATTGGAATGGGAGCATATGGAATAGTGTATAAGTGCAATCTGTATCACACAAATGTTGCTGTGAAAGTTCTCACTCTCAACCCCAATGAAAACCGCAAAAGGAAACAATTTCAGCAGGAGTTAGAGATTTTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCAGATCACGGATGCCTTGTGTATGAATATATGGAGAATGGTAACTTGGAGGACAGACTACTAAGAAAAAACAACACTTCCCCAATCCCATGGTTTGAGAGGTTTCGAATAGCCTGGGAAGTTGCATCAGCTCTCGCCTTTCTTCATAGCTCAAAGCCAGAACCTATCATTCATCGTGATTTGAAACCGGCAAACATCTTGCTTGATCGTAACCTTGTCAGCAAGATCGGTGACATTGGCCTTTCTACAGTGCTTCATTCAGATAATTTGTCTACCATGTACAAGGACACTGCACCTGTTGGGACACTCAGCTACATAGATCCTGAGTATCAAAGGACCGGGTTAATATCTCCAAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAGGTGGAAACAGCTATTGATGGCGGGAATTTAACTGACATATTGGATACAGAAGCAGGAGCTTGGCCATATCAAGAGACACTAGAGTTGGCTTTGCTAGGACTGAGCTGTGCAGAACTTCGGCGTAGAGACCGGCCTGATTTACAAGATCACGTGCTTCCAACACTAGAGAGATTGAAACAAGTTTTTGATAGGGCCCAACATTCTGCTTCAATTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGACCCTTGTGTTGCTGCTGATGGATACACATATGATCGCAAAGCAATTGAAAAGTGGCTTGAAGAGAACCACAAATCACCAATGACGAACATGGCTTTACCTCATAAGCATTTAATTCCTAATTACACACTTCTCTCAGCAATTTTGGAGTGGAAGTCCAGAGAATCGTGA 2334 0.4096 MSQHSSSSVVALAIKGDKKSKYVVQCALNKFVPEGMIIFKLIHVHAATAFKKEVEWQTNQMLLPFKIMCEQRKVHVDVVVIESDDVATAVAEEVAKGAITKLVVGASSHGLFKSKQKGMSTKISVCTPRFCTIYAISKGKLSIRPSDMPIGGSIIDDASESETSLSTSSSSNYNSTSQTESASVSSYAGLQSSSLTTQRFQALSSINSALLSTNPSFPDTNHSRGQSLDLGTENTATSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSSKEVQLETTLPSPNRQAKFNLELEKLRIELRHAQGLHAVAQSEKIEASRKLNELSKRRSEETMKTKEIIAKEEKAKDLARLERDKYQDASREAAYLKECAEREAAERKETELKAILAAKETKKLEGALSGSTPQYRKFAWDEIVLATSSFSEDLKIGMGAYGIVYKCNLYHTNVAVKVLTLNPNENRKRKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNNTSPIPWFERFRIAWEVASALAFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLSYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIDGGNLTDILDTEAGAWPYQETLELALLGLSCAELRRRDRPDLQDHVLPTLERLKQVFDRAQHSASIVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENHKSPMTNMALPHKHLIPNYTLLSAILEWKSRES* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2613 777 CDD RING-Ubox_WDSUB1_like 711 751 - -
Gso6g2613 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Gso6g2613 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 777 IPR013083 -
Gso6g2613 777 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 5 773 - -
Gso6g2613 777 SMART serkin_6 421 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2613 777 PANTHER OS02G0152300 PROTEIN 5 773 - -
Gso6g2613 777 Pfam Protein kinase domain 423 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2613 777 ProSitePatterns Protein kinases ATP-binding region signature. 427 448 IPR017441 GO:0005524
Gso6g2613 777 MobiDBLite consensus disorder prediction 215 242 - -
Gso6g2613 777 ProSiteProfiles Protein kinase domain profile. 421 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2613 777 SUPERFAMILY Protein kinase-like (PK-like) 402 678 IPR011009 -
Gso6g2613 777 Pfam U-box domain 708 775 IPR003613 GO:0004842|GO:0016567
Gso6g2613 777 MobiDBLite consensus disorder prediction 157 177 - -
Gso6g2613 777 Gene3D Transferase(Phosphotransferase) domain 1 496 705 - -
Gso6g2613 777 SMART Ubox_2 710 772 IPR003613 GO:0004842|GO:0016567
Gso6g2613 777 ProSiteProfiles U-box domain profile. 706 777 IPR003613 GO:0004842|GO:0016567
Gso6g2613 777 Coils Coil 340 360 - -
Gso6g2613 777 SUPERFAMILY RING/U-box 705 775 - -
Gso6g2613 777 Coils Coil 373 393 - -
Gso6g2613 777 Gene3D Phosphorylase Kinase; domain 1 399 495 - -
Gso6g2613 777 Coils Coil 294 328 - -
Gso6g2613 777 MobiDBLite consensus disorder prediction 152 177 - -
Gso6g2613 777 CDD STK_N 9 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2613 Gso-Chr6 47907488 47915821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2613 7 774 U-box Gene Family AT4G25160 50.365 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso6g2613 Pkinase 9.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2613 - - gmx:100818628 1450.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0995 4 14248158 14255934 Gso6g2613 6 47907488 47915821 GST