Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2610 ATGGCTTCAGAGAAGAAACTTTCGAACCCAATGAGGGAGATAAAAGTGCAGAAGCTCGTCCTCAATATCTCTGTTGGCGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAACTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGTTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTCAGAGGTGACAAGGCAATGCAACTTTTGGAGAGTGGTTTGAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGTGATACTGGTTGCTTCGGCTTTGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTATGGAATGGATTTCTTTGTTGTTCTGGAGCGACCTGGCTATCGTGTTGGACGTCGCCGAAGATGCAAGTCCCGTGTTGGAATTCAGCACCGAGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAGTACGAGGGAGTGATCCTTAACAAGTCCCAGGCTATTCTTTAG 546 0.456 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2610 181 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 180 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gso6g2610 181 SUPERFAMILY RL5-like 8 173 IPR022803 -
Gso6g2610 181 Pfam Ribosomal protein L5 9 62 IPR031310 -
Gso6g2610 181 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gso6g2610 181 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Gso6g2610 181 Gene3D - 2 177 IPR022803 -
Gso6g2610 181 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Gso6g2610 181 PANTHER 60S RIBOSOMAL PROTEIN L11-1 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2610 Gso-Chr6 47889442 47891735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2610 1 180 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 96.111 1.55e-129 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2610 K02868 - gmx:100819731 340.117