Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2591 ATGGAGGTCTCAAAACGTGTGCCTATGGCGAGGAAAGAGGTTGGGTCCAAGGGAGAGCCCAGACAACTATTAGCCAACCATTTTGGAGTTTGCCTAGTCAAGCCCAAGGATGATATTGATGGCTACTTCTACCATTATGATGTTGCCATGAGTTATGAAGATGGGAACCCTGTTGAGGCCAAGGGTGTAGGGAGAAAGGTCTTAAATCAAGTTTGTGAAACATATGTTGAACTGAGAAACATGAGTTTTGCATATGATGGTGAAAAAAGTCTATTCACTCTTGGTCCTCTAGCAAGTCAGAGGCTTCAATATCCTGTTGTGTTGGAGGATGTTTCATCAAGGAGGGTTGGAAAGAATGGAAACCCTGCTGAGAGTCCTAAGGGAGGATATACAAAAAGAATGAGAATTAGGCATCAGTTTCGGCCAAAAACTATCAACGTGGATATCAAATATGCAGCCAAAATTCCATTGCAAGCAATTGAAGATGCATTGCGTGGTCGGGATTCTGAGAAATCTCAGGAAGCAGTGAGGGTTCTAGACATCATACTGAGACAGCATTCTGCAAACCAGGGATACCTCCTTGTTCGCCAATCCTTCTTTCATGACAATCGAAGAACCTGTACTGATATAGGAGGTGGTGTGCAAGGGTGCCGCGGTTTTCATTCAAGCTTTCGAGTCACACAAGGAGGTTTATCTCTCAACATGGATGTGACAACCACAATGATTGTAAAGCCTGGCCCTGTGGTGGACTTCCTTCTCCAGAATCAGAGTGTTCAGAACCCAAACTACATTGATTGGACCAAGGCAAAGAGAATGCTGAAGAACCTAAGAATCAGGGCTAATGGTGTTGAGTTCAAAATCTCTGGATTGAGTGATAACACTTGCAGGAATCAGAAATTTCTTTTAAGGCAAAAGGGTACGAATGGTGAAGTGCAGGAAAGGGAAATCACAGTTCATGACTACTTTACACGCCAAAAACTGATTGGCCTGAACTATTCTGCTGACATGCCATGCATCAATGTTGGCAAACCAAAACGCCCGTCTTATTTTCCAATAGAGCTATGTGAAATGGTCTCGTTGCAGCGTTACACCAAGGCTCTAACAAATTTGCAAAGGGCTCAGCTAGTGGAGAAGACAAGGCAAAAGCCCCAAGTTAGGAGACAAGCTTTGGAAGATGCCTTAAGAAGCAGCAGATATGACGATGAACCTATGCTTCGCTCTTCTGGGATTACCATTGAACCTAACTTTGTTAGACTCGTTGGTCGTGTATTGGAACCCCCAAAGCTTATAGTTGGAGGAGAGAAGAGCATCATTCCCCGGAATGGGCGCTGGAATTTCAACAATAAGAAACTATATGAACCTTTGATGATTGGTCGTTGGGCCATTGTAAACTTCTCAAGTCGGTGTGACACAAGACTCCTGATAGAACTCATTAGGAGGTGTGCTGCAGCTAAAGGGATGACCATGAGCAATAGTCTCTTTGATAAAGTAATTGAAGAGGATGGTTGCTTCATACGTGAACCACCAAATGTCAGGGTAGAGAGAATGTATGCAAAGCTGAGGACCACTCTGCCGCACGAGAAACCTCACTTTCTGTTGTGTATTCTTCCAGAGAAAAAGAATTCTGACATTTATGGTCCTTGGAAGAAGAAAAGTCTTGTTGAAGAAGGGATTGTAACACAATGTATTGCACCAACAAAGATTAATGATCAATACATTACTAATGTACTTTTGAAAATTAATGCAAAGTATGGTGGGATGAATTCGTATCTGTCAGTTGAGCTTTGTAATTCCATTCCATTTGTTTCAGCTGTACCAACCTTGATTCTTGGTATGGACGTTTCTCATGGATCTCCTGGTCGATCAGATGTGCCCTCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCACGTTATAGAGCTTCAGTTCGCACACAATCATCAAAAGTTGAGATGATTCAATCTCTATTCAAGCCTGTGGCTAATACTAATAAGGATGAAGGTATCATCAGGGAGGTGCTGTTGGACTTTGAAATTACTTCATTCAAAAGAAAGCCTCAACAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAGGTGCTCAATATTGAGTTAAGTCAAATCATTGAGGCATGCAAACACCTTGATGAAAAATGGGATCCAAAGTTCACTTTGATTATTGCCCAGAAGAATCATCATACTAGGTTCTTTCAGGCCAATGCTAGAGATCAAACTAATGTTCCACCAGGAACCGTTATTGACAACACTGTCTGTCATCCCAAAAACAATGACTTCTACTTGTGTGCTCAAGCTGGGATGATTGGGACAACTCGACCTACTCACTACCATGTTTTACACGATGAAATCGGATTCTCAGCTGATGAAGTGCAAGAATTAGTGCATTCATTGTCTTATACGTATCAGAGGAGCACAACTGCTGTATCATTAGTCGCTCCCATTTGCTATGCCCACTTGGCAGCAGCCCAGATGGCACAATTTATGAAGTTTGATGAACATTCTGAGACTTCTTCAACCCATGGTGGACTCACATCTGCTAGCGCACCTTTAGTACCTCAATTACCACGTCTTCACAAACAAGTCATCAACTCCATGTTCTTTTGTTAA 2646 0.4233 MEVSKRVPMARKEVGSKGEPRQLLANHFGVCLVKPKDDIDGYFYHYDVAMSYEDGNPVEAKGVGRKVLNQVCETYVELRNMSFAYDGEKSLFTLGPLASQRLQYPVVLEDVSSRRVGKNGNPAESPKGGYTKRMRIRHQFRPKTINVDIKYAAKIPLQAIEDALRGRDSEKSQEAVRVLDIILRQHSANQGYLLVRQSFFHDNRRTCTDIGGGVQGCRGFHSSFRVTQGGLSLNMDVTTTMIVKPGPVVDFLLQNQSVQNPNYIDWTKAKRMLKNLRIRANGVEFKISGLSDNTCRNQKFLLRQKGTNGEVQEREITVHDYFTRQKLIGLNYSADMPCINVGKPKRPSYFPIELCEMVSLQRYTKALTNLQRAQLVEKTRQKPQVRRQALEDALRSSRYDDEPMLRSSGITIEPNFVRLVGRVLEPPKLIVGGEKSIIPRNGRWNFNNKKLYEPLMIGRWAIVNFSSRCDTRLLIELIRRCAAAKGMTMSNSLFDKVIEEDGCFIREPPNVRVERMYAKLRTTLPHEKPHFLLCILPEKKNSDIYGPWKKKSLVEEGIVTQCIAPTKINDQYITNVLLKINAKYGGMNSYLSVELCNSIPFVSAVPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPQISRYRASVRTQSSKVEMIQSLFKPVANTNKDEGIIREVLLDFEITSFKRKPQQIIIFRDGVSESQFNQVLNIELSQIIEACKHLDEKWDPKFTLIIAQKNHHTRFFQANARDQTNVPPGTVIDNTVCHPKNNDFYLCAQAGMIGTTRPTHYHVLHDEIGFSADEVQELVHSLSYTYQRSTTAVSLVAPICYAHLAAAQMAQFMKFDEHSETSSTHGGLTSASAPLVPQLPRLHKQVINSMFFC* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2591 881 SUPERFAMILY Ribonuclease H-like 524 840 IPR012337 -
Gso6g2591 881 SMART Piwi_a_2 531 842 IPR003165 GO:0003676
Gso6g2591 881 SMART DUF1785_2 193 245 IPR014811 -
Gso6g2591 881 Pfam PAZ domain 249 375 IPR003100 GO:0005515
Gso6g2591 881 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 4 880 - -
Gso6g2591 881 Gene3D - 423 592 - -
Gso6g2591 881 ProSiteProfiles PAZ domain profile. 285 359 IPR003100 GO:0005515
Gso6g2591 881 CDD Piwi_ago-like 403 836 IPR045246 -
Gso6g2591 881 Gene3D - 598 881 IPR036397 GO:0003676
Gso6g2591 881 CDD PAZ_argonaute_like 245 358 - -
Gso6g2591 881 Pfam Argonaute linker 1 domain 195 243 IPR014811 -
Gso6g2591 881 Gene3D paz domain 239 363 - -
Gso6g2591 881 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 880 - -
Gso6g2591 881 ProSiteProfiles Piwi domain profile. 531 842 IPR003165 GO:0003676
Gso6g2591 881 Pfam Piwi domain 532 842 IPR003165 GO:0003676
Gso6g2591 881 Pfam N-terminal domain of argonaute 22 183 IPR032474 -
Gso6g2591 881 SUPERFAMILY PAZ domain 240 399 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2591 Gso-Chr6 47691274 47698783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2591 11 881 Eukaryotic Initiation Factors Gene Family AT5G43810 34.763 5.72e-147 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2591 K11593 - gmx:100812218 1776.14