Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2578 ATGGCATTCAGACTTGGGCAAAGACGACTGAGTTTGGAAGCGAGGTTGGATCTAGCGAAAGAAGTTAATCTCTCACACCATAACAAGCCAAGGAGTTCTCGGAAACACAATGAAGTAAGAGTCATCCGGGGCATGAGAGATGGTGTGAATCCAAATAACAAAATCTATGTCTATGATGGTCTTTATAAAATCCAAGATTCATGGATAGAAAAAGCAAAAGGTGGTGGTGGTGGTGTATTTAAGTATAAGTTGGTGAGAATGGCTGGTCAATCTAGTGCCTTTGCTGTTTGGAAATCAATTCAGAAGTGGAAATCTGGCACCCCTTCAAGGACCTTTCCAATGGAGATGAGGGTATTCCTGTATCACTTGTCAGTGAGGTCGATAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCATACACTGGCAGCGCGAATAGAAGTTGTTGACAGAGCCAAGGTAAGTCATCTTGTGAGGGAAGGAGATGAGTATGTTTTTGATACAACCCGTATTTATGGTCAATTCAAGTGGAATTATGAGCCTAGGCTTTTGGATGAAGTCGATCCCAATGACTCTACTAATGATTATGCCATGCCATATCCTTTAATTATAAGGGCCAAGAATATTGGGAATGTAGCTAGATTTATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCTGTCGTGTATGAAGAAAACAACCAATCCTACTTCCATGTTGCATTTTTTGCACTCAGACACATTCCACCAATGACAGAGTTAACATATGACTATGGAATTGCCCAGTCAGATCATGCTGAGGGTAGCAGCAGTGCAGAAACCAAAGGGAGAAAGAAATGCTTATGCGGATCATCAAGATGCTGCGGTTCTTTTGGTTAA 885 0.4169 MAFRLGQRRLSLEARLDLAKEVNLSHHNKPRSSRKHNEVRVIRGMRDGVNPNNKIYVYDGLYKIQDSWIEKAKGGGGGVFKYKLVRMAGQSSAFAVWKSIQKWKSGTPSRTFPMEMRVFLYHLSVRSITALALGEMKVISHTLAARIEVVDRAKVSHLVREGDEYVFDTTRIYGQFKWNYEPRLLDEVDPNDSTNDYAMPYPLIIRAKNIGNVARFMNHSCSPNVFWQPVVYEENNQSYFHVAFFALRHIPPMTELTYDYGIAQSDHAEGSSSAETKGRKKCLCGSSRCCGSFG* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2578 294 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 155 279 - -
Gso6g2578 294 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 30 185 - -
Gso6g2578 294 ProSiteProfiles SET domain profile. 53 261 IPR001214 GO:0005515
Gso6g2578 294 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 30 185 - -
Gso6g2578 294 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 155 279 - -
Gso6g2578 294 SUPERFAMILY SET domain 152 291 IPR046341 -
Gso6g2578 294 SMART set_7 28 267 IPR001214 GO:0005515
Gso6g2578 294 ProSiteProfiles Post-SET domain profile. 278 294 IPR003616 -
Gso6g2578 294 Gene3D - 6 111 IPR036987 -
Gso6g2578 294 ProSiteProfiles YDG domain profile. 1 86 IPR003105 -
Gso6g2578 294 Pfam SAD/SRA domain 31 90 IPR003105 -
Gso6g2578 294 SUPERFAMILY PUA domain-like 29 108 IPR015947 -
Gso6g2578 294 SMART G9a_1 1 90 IPR003105 -
Gso6g2578 294 Gene3D SET domain 137 293 IPR046341 -
Gso6g2578 294 Pfam SET domain 191 261 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2578 Gso-Chr6 47550528 47552389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2578 148 294 Su(var)3-9 homologs AT5G04940 56.463 9.94e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso6g2578 SET 5.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2578 K24405 - gsj:114416384 606.675