Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2577 ATGTCGAAAAGCAAAGCGAAAAAGAAAAATAGTGATAGCGATGAAGACGACGACGTTTTCTACTACCGCTATAGCAGCGTCAACCCTACCCAAACTCAAACTCAAACCCAAACCCTACAACACAATCCAAATCCCAAATCCAACAACAACAAGGGATCTTCGTCTTCTTCCTTGGCTCCGTCGAAATCAACGTTGTACGTTTCGAACATCGACTACTCCCTCACGAACTCCGACCTCCACACGCTCTTCTCCACCTTCGGCCGCGTCGCGCGCGTCACCGTCCTCAAGGACCGCCACACGCGCCTCAGCCGCGGCGTGGCCTTCGTCCAGTTCGTGTCGCGCCACGACGCGCACGATGCGGCCGCGCAGATGGACGGGAAGGTGCTCAACGGCCGCACCCTCGCCGCCTCCATCGCCGCCGACAACGGCCGCGCCCCCGAGTTCATCCGCAAGCGCGTCTACCGCGACACCGATCGCTGCTTCGAGTGCGGAGAGCAAGGGCACCTCTCGTACGACTGCCCGCGTAATCAGCTCGGCCCCCGCCAACGCCCCGAGCCTAAACGCCCCCGCCGTGGGCCCCACCCCCACCGCCATCGCCATAACGACAACGACGATGTCGGAGGCGACGATGACGATTATGACGGCGGGGCTGAGCGGTTTGAGGATGATAATTGGGCTTCTGTTGTGGATGACGGTGCTGGTGAGAGGCTCTTGGCGGGAAACCAACATGATGGTGACGGTGTTGTGGCTGGAAAGAGTAAGAAGAAAAAGAACAAGGGTGGGTACTTCAGTGACGAGAGTGATGATGATGAATAG 816 0.5846 MSKSKAKKKNSDSDEDDDVFYYRYSSVNPTQTQTQTQTLQHNPNPKSNNNKGSSSSSLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRVARVTVLKDRHTRLSRGVAFVQFVSRHDAHDAAAQMDGKVLNGRTLAASIAADNGRAPEFIRKRVYRDTDRCFECGEQGHLSYDCPRNQLGPRQRPEPKRPRRGPHPHRHRHNDNDDVGGDDDDYDGGAERFEDDNWASVVDDGAGERLLAGNQHDGDGVVAGKSKKKKNKGGYFSDESDDDE* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2577 271 Gene3D - 152 197 - -
Gso6g2577 271 ProSiteProfiles Zinc finger CCHC-type profile. 159 175 IPR001878 GO:0003676|GO:0008270
Gso6g2577 271 SUPERFAMILY Retrovirus zinc finger-like domains 143 176 IPR036875 GO:0003676|GO:0008270
Gso6g2577 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Gso6g2577 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Gso6g2577 271 MobiDBLite consensus disorder prediction 1 60 - -
Gso6g2577 271 SMART rrm2_1 64 137 IPR003954 GO:0003676
Gso6g2577 271 MobiDBLite consensus disorder prediction 24 60 - -
Gso6g2577 271 MobiDBLite consensus disorder prediction 171 271 - -
Gso6g2577 271 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 270 IPR044598 GO:0000398|GO:0005689
Gso6g2577 271 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Gso6g2577 271 MobiDBLite consensus disorder prediction 1 21 - -
Gso6g2577 271 Gene3D - 22 151 IPR012677 -
Gso6g2577 271 MobiDBLite consensus disorder prediction 248 264 - -
Gso6g2577 271 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Gso6g2577 271 SUPERFAMILY RNA-binding domain, RBD 27 146 IPR035979 GO:0003676
Gso6g2577 271 SMART rrm1_1 64 137 IPR000504 GO:0003723
Gso6g2577 271 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 270 - -
Gso6g2577 271 CDD RRM_ZCRB1 64 139 IPR034219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2577 Gso-Chr6 47547284 47548536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2577 63 139 Eukaryotic Initiation Factors Gene Family AT4G34110 36.364 2.41e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2577 K13154 - gmx:100814914 405.216