Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2572 ATGATGACAACAGAAGCTGAGACTGAGAGGGTAGTGGTGATCCAGGATGCATCAAGAGATGTTAATTCAAATGCAATCCTAAGGGCCCTGGAATGGTTTTCTGTTAAAGCTGGAGATCAGCTTATAATTGTTGCTATCCTTGATTGGATTAGCAGTCCTAGTATGTTTTCTTTACTTCCAAGAAAGCGTTTGGGTTACATGGTCAGAGTTGATTCCAGTTCAATGATTTCAACAAACAAGAAAATAATTGAAAAAAGGCTTACCAAAATAAAGGAAGAATATCTTAGGAACCAGAACATCGAGGAGATCTCCAACTACTGTAAATTGAATGAGATTGGATTCCAATTAGAAGTACTTGTAGGCTCTACTGCAGAGGTTGCTTCTAATGCTGCTAAGGAATTTCAGGCGACAAGGTTGATACTAGTTAGACAAATTCACAAAGATATGAAGCATTTCATGCGCAACCTCCCTTGTGGTATGTATAGGATAACAAGTGACAATTCAATTGAGAGGTTGAAAGATCCAAAATCAGCAGTCAGTACCAAAACATTTGCCGACAAGCAAGAAAATGTAAGCTATAAAGAAATGTTTCCAGGAAGTGAAGAGGAGGAACGTTCTCTTCTGATGTCTAGGTCTTCATCAAGTGATCTGTTGACACCAACTGTAGTTTCAAGTCAGTGGAGTACAGAAGTCTCCACTTCTAGTTTTGGAAGCTTGCGGCATGGCTGTCAATACCAAGAGGGAAAGTTTTATTCAAATATAGAACAAGAAACAACATGGAACCGATCACTATTTCACATTTCGGAGAATGAAGAAACAAGTCAAATAGAAGTAAATCAAAAGGAGCAGAACAGCAGAAATAACGAAGCATCTCATATGGAGGAAGAATTCACAAATCCATTTTGTTCCGTGTGCAATAATAGACGGCCAAAAATTGGATTGAAGAGAGATTTCAGTTATGCGGAGCTTCATACTGCGACACAAGGATTTTCTCCTAAGAACTTTCTGTCAGAAGGTGGATTTGGATCTGTCTACAAAGGGCTGCTGAATGGAATGAAGATTGCTGTTAAGCAACATAAATATGCAAGCTTCCAAGGAGAGAAGGAATTTAAGTCTGAAGTGAATGTGCTTAGCAAAGCAAGACATGAGAATGTGGTTGTGCTGCTAGGTTCATGCTCAGAAAAAAACGATAGGCTTCTTGTGTATGAATATGTCTGCAATGGCTCTCTTGACCAACATATATCAGAACACTCTCGATCACCTCTTAGTTGGGAAGATAGGATCAACGTAGCTATTGGAGCTGCCAAAGGCTTACTATACTTGCACAAGAACAACATAATACACAGAGATGTGAGACCAAACAATATCCTTATTACACACGATTATCAACCATTGCTGGGAGACTTTGGATTAGCAAGAAATCAAAATCAAGACTCGATACACTCAACGGAAGTTGTTGGAACTTTGGGGTACTTGGCACCCGAATATGCAGAACTTGGCAAAGTGTCTGCCAAAACAGATGTATATTCTTTTGGGGTGGTTCTACTGCAACTAATAACAGGAATGAGAACTACAGATAAAAGACTCGGAGGAAGAAGTCTTGTGGGATGGGCAAGGCCACTTTTAAGAGAAAGGAACTATCCAGATTTAATTGATGAAAGGATCATCAACTCTTATGATGTCCATCAACTATTTTGGATGGTTCGAATAGCAGAAAAATGTCTAAGCAGGGAGCCTCAAAGGAGACTAAATATGGTGAAGGTTGTTGATGCTCTAACTGACATAGTGGAAGGCAGAACATGTGACATCAGATTAAGGGATTACTCCCCTGCAAGGTCAGATTCAACCAATGGTGTATCCGACTCTGATGAATCTAAAGATGAAATGCAGGAACCCTTCAGGTTTGAAGAGGAGTTACTAAGTCACAGTTCAGAATCCATAGAAAATAACAACATAAGTCAGATGATGCAGATGATTGTAAGACAGCCACCATCCCCTCCAATTCAGAGCATCTTTTCATGTATCTCAAGCTCATATAAGTTTCATTATGAGTCAACTAGTGATGGTGAAGCACAGAATGAAGGGGAAATAGAAATATCAAATTCGAATGGAGGGTTACTATATTCTTAG 2130 0.3934 MMTTEAETERVVVIQDASRDVNSNAILRALEWFSVKAGDQLIIVAILDWISSPSMFSLLPRKRLGYMVRVDSSSMISTNKKIIEKRLTKIKEEYLRNQNIEEISNYCKLNEIGFQLEVLVGSTAEVASNAAKEFQATRLILVRQIHKDMKHFMRNLPCGMYRITSDNSIERLKDPKSAVSTKTFADKQENVSYKEMFPGSEEEERSLLMSRSSSSDLLTPTVVSSQWSTEVSTSSFGSLRHGCQYQEGKFYSNIEQETTWNRSLFHISENEETSQIEVNQKEQNSRNNEASHMEEEFTNPFCSVCNNRRPKIGLKRDFSYAELHTATQGFSPKNFLSEGGFGSVYKGLLNGMKIAVKQHKYASFQGEKEFKSEVNVLSKARHENVVVLLGSCSEKNDRLLVYEYVCNGSLDQHISEHSRSPLSWEDRINVAIGAAKGLLYLHKNNIIHRDVRPNNILITHDYQPLLGDFGLARNQNQDSIHSTEVVGTLGYLAPEYAELGKVSAKTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLRERNYPDLIDERIINSYDVHQLFWMVRIAEKCLSREPQRRLNMVKVVDALTDIVEGRTCDIRLRDYSPARSDSTNGVSDSDESKDEMQEPFRFEEELLSHSSESIENNNISQMMQMIVRQPPSPPIQSIFSCISSSYKFHYESTSDGEAQNEGEIEISNSNGGLLYS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2572 709 SMART tyrkin_6 330 592 IPR020635 GO:0004713|GO:0006468
Gso6g2572 709 PANTHER OS01G0253100 PROTEIN 12 621 IPR045271 GO:0004714|GO:0006468
Gso6g2572 709 MobiDBLite consensus disorder prediction 686 709 - -
Gso6g2572 709 Gene3D Phosphorylase Kinase; domain 1 303 404 - -
Gso6g2572 709 SUPERFAMILY Protein kinase-like (PK-like) 314 592 IPR011009 -
Gso6g2572 709 Gene3D Transferase(Phosphotransferase) domain 1 405 607 - -
Gso6g2572 709 MobiDBLite consensus disorder prediction 609 631 - -
Gso6g2572 709 Pfam Protein tyrosine and serine/threonine kinase 335 591 IPR001245 GO:0004672|GO:0006468
Gso6g2572 709 ProSiteProfiles Protein kinase domain profile. 330 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2572 709 ProSitePatterns Tyrosine protein kinases specific active-site signature. 446 458 IPR008266 GO:0004672|GO:0006468
Gso6g2572 709 PANTHER TYROSINE KINASE FAMILY PROTEIN 12 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2572 Gso-Chr6 47478172 47489703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2572 318 598 Trihelix Transcription Factor Family AT5G38560 45.667 3.69e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gso6g2572 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2572 - - gsj:114417376 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1039 4 15950347 15957034 Gso6g2572 6 47478172 47489703 GST