Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2569 ATGGGGTTTCAGCCATTGAATTGGTACTGCCGGCCAGCAGAGAACAGCATTTGGGCAAAAGCAGTGGATAGTGCTTTTGGGTCCTATACACCTTGTGCAATCAACACTCTTGTTATCTCCATTTCCAATTTGGTTCTTGTGGGTTTGTGCTTGTATCGGATATGGCTTATCACTTGCAATGCTAAAGCTCAGAGGTTTTGTTTGAGTTCGAATTGCTATAGCTATCTTCTGGGAATGTTGGCTGCTTATTGTGCTGTTCAACCTATTTTGAGATTGTTAACTGGAAATTCAGCTTTCAACCTGAATGGCGAAACCGAATTTGCTCCAGTTGAGATAACTACACTGATCGTTGAAGCGCTTACTTGGAGCTCAATGATAACTCTCATCCTCTTGGAAACAAAGGTTTATATCAGACAATTTAGATGGTTGGTGCGCTTTGGAGTTATATATGTTTTGGTGGGAGATATTGTAATGCTTAACCTTCTTCTGCCAGTGAAAGATTACTGCAGCAGATCTGCTCTGTTTCTGTACATTAGCAGTTTCATCTGCCAGGTGTTGTTTGGTACCTTACTTTTTGTTTACATTCCGGATTTGGTTCCTTATTCTGGTCATACAACAATGCAAGCTGAGCTACCTGACCATGGTGAATATGAACCTCTTTGTGGAGATGATCAAGTTTGCCCTGAGAGGCATGCCAACATATTCTCTAGAATATGTTTCGGATGGATAACGCCACTCATGAAACAAGGCTACAGAAAACCAATAACTGAAAAGGATGTTTGGAAGCTAGATGAATGGGATCGAACAGAGACATTAACTGAAAAGTTCCAAAAGTGTTGGATGTTAGAATTTCAAAGCTCTAACCCATGGCTTTTAAGAGCATTGAACAGTAGTCTGGGGAAAAGGTTTTGGATGGGAGGCATCTTTAAGATTGGTAATGATCTTTCTCAGTTTGTGGGACCTATTTTGCTGAATCATCTCTTAGATTCAATGCAAAGAGGAGACCCATCTTGGATTGGTTACATCTATGCCTTCTCAATATTTGTTGGAGTGGCAGTTGGTGTTCTTTGTGAAGCACAGTATTTCCAGAATGTTATGCGTGTTGGTTTTCGGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCTTTAAGGCTAACTAATGATGGTCGAAAGAACTTCCCATCTGGGAGGCTTATGAATATGATAACATCAGATGCCAATGCATTACAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGTATCACTGTAGCTATTGTTCTCCTATACCAGCAACTAGGTGTTGCTTCACTTATTGGATCATTAATGCTAGTTCTCATTATCCCACTGCAGACATTTGTGATTAGCAAAATGCGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTCATGAATGAAATTCTGGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAATTCTAAGCATACGAGACAACGAGCTATCATGGTTCCGCAAAGCCCAGCTGCTATATGCTCTTAACAGTTTTATACTGAACAGCATCCCTGTTCTTGTGACGGTGACCTCATTTGGAATGTTCACTTTACTGGGTGGAGAATTGACACCTGCCAGGGCATTTACCTCATTATCTCTGTTTTCAGTTTTGCGCTTTCCTTTAAATATGCTACCAAACTTACTAAGTCAGGTAGCAAATGCAAATGTCTCATTGCAACGTTTGGAGGAACTGTTCTTAGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCGTAAGGAAGAGAAACCGACATTATCAGATATCAATGTGGAAATACCAGTTGGCAGCTTAGTTGCAATCATTGGCGGTACTGGAGAAGGCAAAACATCACTTATTTCAGCGATGATTGGAGAGTTACCTCCTTTAGCCAATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCCACAGTTCGTGAAAACATATTATTTGGATCAAAATTTGAATATGAACAATATCGGAAGGTCATTGATATGACTGCTCTACAGCATGATCTCAACTTACTACCTGGACGTGATTTTACAGAGATCGGAGAAAGAGGAGTCAATATTAGTGGTGGTCAAAAGCAAAGAGTTTCCATAGCTAGGGCTGTATACTCAAATTCGGATATATATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTACGAGGGAAAACCAGGGTTCTTGTCACCAACCAACTACATTTTCTCCCTCAGGTGGATAAAATCATTCTGGTTAGTGAAGGAATGATTAAGGAGCAGGGAACCTTTGAGGAGTTATCAAAAAGTGGGCCTCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAGCAGATAATAATGAAGATAGAGAAAGTCATGGCACAGATAACGATTTACCCATGAATAATGAAGCAATTGAGGAATTACCAAGTGATGCAAGCTATGAGAAAAAAGGAAAATTACGAAAATCAGTACTTATTAAGAAAGAAGAGCGGGAGACAGGCGTGGTTAGTTGGAAAGTTGTAATGCGGTACAAATCTGCACTGGGAGGACTGTGGGTAGTTTCCATACTATTTTCTTGCTATACATTAACAGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGTGTGTGGACATCTCAAGATTCCACTGCAGATTATGATCCAACGTATTTTCTTTTGATCTATGCACTTTTCTCATTTGGACAGGTATCTGTGGCACTTGCAAACTCTTATTGGTTGATCATTTGTAGTCTTCGTGCTGCCAAAAATTTGCACGATGCAATGCTAGATAAAATCCTCCGGGCTCCTATGGTATTCTTCCAAACTAATCCGGTTGGCCGCATAATTAATAGGTTTGCAAAAGATACGGGAGATATAGATACCAATGTTTTTAATTTGGTGAACATGTTTTTGGGGCAAGTCTGGCAACTACTTTCGACATTTGTTCTTATAGGCACCGTGAGCACCATATCCCTGTGGGCTATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATCTATATTACCAGAGCACAGCTCGAGAGGTAAAGCGCATGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCACTGAACGGTTTGTCAAGCATTCGTGCATATAAAGCATATGACAGAATGGCACACATTAATGGAAAATTCATGGATAAAAACATCAGATTCACTCTTGTGAATATCAGCTCAAATCGTTGGCTAACCATAAGGCTAGAAACATTAGGAGGCCTGATGATTTGGTTGATAGCAACATCTGCTGTCTTGCAGAATGCAAGAGCTGCAAACCAGGCAATGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTCCTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATTCTGTTGAGCGTGTCGACACATACATAAATTTAGAAACTGAGGCTCCCGGTGTAATTGAGACACATCGTCCACCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCAGAACTTCCTCCAGTGTTGCATGGATTGTCCTTTACAGTACCTCCAACTGAGAAGATAGGGATAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAACGCACTATTCCGGATTGTGGAGCTACAAAAAGGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGATTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGCAAGCTTTAGAAAGGGCGCATTTGAAGGATGTAATAAGAAGAAATACGTTTGGTCTAGATGCTAAGGTTTCAGAGGGAGGAGACAATTTTAGTGTTGGACAGAGGCAACTGTTAAGTCTAGCTAGAGCATTGCTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACTGATGCACTTATACAGAAAACTATCAGACAAGAATTTCAGTCCTGCACAATGCTCATCATTGCACACAGACTAAATACAATCATCGACTGCAATCAGATTCTGCTGCTAGATGCTGGCCGGGTTCTTGAATATAGTTCACCAGAGGAGCTCTTACAAAACGAAGGAACTGCTTTCTACAAGATGGTTCAAAGTACTGGACCTGAAAATGCTCAGTATTTATGTAGCCTAGTATTTGGAAAGACAGAGAATAACTCTAATGAATATAACAAGGAGTTGGAACACCATGTGAGACAATTAGCTTCTTCTCACTGGACTTCTGCTACTCAGTTTGCCATAGCTTCTACCCTTTCTTCATTACACCAGCACCTTCAAGAGCCAAGTAGTGAAGAAAATAAAGATATCCTTCATAAAACAACGGCTGCAGTTACAACACTTCAAGAAGTTCTAGTGGGGAAGCATGATGAAGACATAGAAGAGACACTGTATAAATACCATATTCCTACAGATAGATGGTGGTCTACTCTCTATAAAGTTATTGAAGGTCTTTCTCTTTTGAAGAGGTTGCCTCTAGACAACATTCAACAACTAGAACTTGATTTTGAAGGGAGATCTTTTGACTAA 4848 0.4 MGFQPLNWYCRPAENSIWAKAVDSAFGSYTPCAINTLVISISNLVLVGLCLYRIWLITCNAKAQRFCLSSNCYSYLLGMLAAYCAVQPILRLLTGNSAFNLNGETEFAPVEITTLIVEALTWSSMITLILLETKVYIRQFRWLVRFGVIYVLVGDIVMLNLLLPVKDYCSRSALFLYISSFICQVLFGTLLFVYIPDLVPYSGHTTMQAELPDHGEYEPLCGDDQVCPERHANIFSRICFGWITPLMKQGYRKPITEKDVWKLDEWDRTETLTEKFQKCWMLEFQSSNPWLLRALNSSLGKRFWMGGIFKIGNDLSQFVGPILLNHLLDSMQRGDPSWIGYIYAFSIFVGVAVGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTNDGRKNFPSGRLMNMITSDANALQQICQQLHGLWSAPFRITVAIVLLYQQLGVASLIGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDNELSWFRKAQLLYALNSFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFSVLRFPLNMLPNLLSQVANANVSLQRLEELFLAEERNLKQNPPIEPGLPAISIENGYFSWDRKEEKPTLSDINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLANGNATIRGTVAYVPQISWIYNATVRENILFGSKFEYEQYRKVIDMTALQHDLNLLPGRDFTEIGERGVNISGGQKQRVSIARAVYSNSDIYIFDDPLSALDAHIAQEVFRNCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELSKSGPLFQKLMENAGKMEQADNNEDRESHGTDNDLPMNNEAIEELPSDASYEKKGKLRKSVLIKKEERETGVVSWKVVMRYKSALGGLWVVSILFSCYTLTEVLRISSSTWLSVWTSQDSTADYDPTYFLLIYALFSFGQVSVALANSYWLIICSLRAAKNLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDTNVFNLVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYLYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDKNIRFTLVNISSNRWLTIRLETLGGLMIWLIATSAVLQNARAANQAMFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEAPGVIETHRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGIVGRTGAGKSSMLNALFRIVELQKGKIIIDGCDISTFGLEDVRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWQALERAHLKDVIRRNTFGLDAKVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNQILLLDAGRVLEYSSPEELLQNEGTAFYKMVQSTGPENAQYLCSLVFGKTENNSNEYNKELEHHVRQLASSHWTSATQFAIASTLSSLHQHLQEPSSEENKDILHKTTAAVTTLQEVLVGKHDEDIEETLYKYHIPTDRWWSTLYKVIEGLSLLKRLPLDNIQQLELDFEGRSFD* 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2569 1615 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Gso6g2569 1615 Pfam ABC transporter 1255 1403 IPR003439 GO:0005524
Gso6g2569 1615 CDD ABC_6TM_ABCC_D1 306 591 IPR044746 GO:0140359
Gso6g2569 1615 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 919 1201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso6g2569 1615 CDD ABCC_MRP_domain1 615 815 - -
Gso6g2569 1615 Pfam ABC transporter transmembrane region 919 1165 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso6g2569 1615 Pfam ABC transporter transmembrane region 304 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso6g2569 1615 MobiDBLite consensus disorder prediction 843 864 - -
Gso6g2569 1615 SUPERFAMILY ABC transporter transmembrane region 289 591 IPR036640 GO:0005524|GO:0016021
Gso6g2569 1615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Gso6g2569 1615 SMART AAA_5 1264 1443 IPR003593 -
Gso6g2569 1615 SMART AAA_5 642 822 IPR003593 -
Gso6g2569 1615 Gene3D - 1222 1474 IPR027417 -
Gso6g2569 1615 ProSitePatterns ABC transporters family signature. 1375 1389 IPR017871 GO:0005524
Gso6g2569 1615 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso6g2569 1615 SUPERFAMILY ABC transporter transmembrane region 905 1218 IPR036640 GO:0005524|GO:0016021
Gso6g2569 1615 Gene3D ABC transporter type 1, transmembrane domain 284 595 IPR036640 GO:0005524|GO:0016021
Gso6g2569 1615 Gene3D ABC transporter type 1, transmembrane domain 879 1219 IPR036640 GO:0005524|GO:0016021
Gso6g2569 1615 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Gso6g2569 1615 CDD ABC_6TM_ABCC_D2 917 1213 IPR044726 GO:0140359
Gso6g2569 1615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 838 IPR027417 -
Gso6g2569 1615 Coils Coil 574 594 - -
Gso6g2569 1615 MobiDBLite consensus disorder prediction 844 859 - -
Gso6g2569 1615 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 38 1493 - -
Gso6g2569 1615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1238 1472 IPR003439 GO:0005524
Gso6g2569 1615 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1493 - -
Gso6g2569 1615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1471 IPR027417 -
Gso6g2569 1615 CDD ABCC_MRP_domain2 1236 1456 - -
Gso6g2569 1615 Gene3D - 596 861 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2569 Gso-Chr6 47442816 47457753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2569 622 831 Calmodulin-binding Proteins AT2G36910 29.148 1.19e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2569 - K05665 gmx:100811691 3192.91