LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g2566	ATGGCAACAAAAGCACTCATTACCATCCAAAGTTTTCTTGGCTTCATGACCGCCTTCACCATGGCAAGTGCACAATCCCCAAACTACATGAATGATGACTGCCACAACTCAACAACACAACAAGCCCTAACCCTAACATACCAAACCAACCTTCACAACACCCTCTTGTGGCTGTCTTCGGATGCTGCCACAAGCAAAGGATACAATCACACCACCACAGGAAATGGCACAGTTGATGCTGTGTATGGCCTCTATGATTGCAGGGGTGATGTCACAGGATCCTTCTGTCAGTTTTGTGTCTCCACTGCAGCCTCAGAGATTCTTCAACGCTGTCCTAACAAATCTTCTGCTGTGATATGGTATAACTACTGCATTCTCAGGTACTCAAACCATAACTTCTTTGGGAACCTTACCACAACTCCATCATGGCAAATTGTAGGGTCCAAGAACACAACTAATCCAGAAGAGCTTCAGAAATCTGAGGATTACATGCAAAGTTTGAGAAGAGAAGCCACTGTGGAGACCAACAAATTATATGCAATAGGAGGGTTCAATTTGAGTAATGGTGAGGAAAGGTATGGGTTGGTGCAGTGCAGTAGGGACCTTACTAATGTTGAGTGCAGTCAGTGTTTGGAGGCTATGTTAGTCAAAGTTCCTCAGTGTTGTGCTGCAAACCTAGGATGGCAAGTTTTGGCTCCAAGTTGTCTTATAAAGTATGATGATTATATGTTCTACCAGATTACTAATCAAACATCTTCTCTTTTGCCTAATCCAGCTAAGAAGGGAGGTAAAATTAAGTCAACAACCTTGATCATAATCATAGTGAGTGTATTGGTGGCACTAGCTTTAGTAGTTTGCTCTATCTACTACTTGTGGAGGCAGTATCTGTCAAACAAAGATGGATTGCTATCAGTGAACACCCCTACATCTTTTCATGGCCATGTTCAAAGAGAAGATGCATTGACTGTAGACCTTCCTACAATCCCTTTAATTTGGATTCGACAGAGCACTAATAACTTTTCAGAGTTGGATAAATTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTAATTTAGAAGATGGAACAGAAATTGCTGTCAAAAGACTCTCTAAAACATCTGGTCAAGGTTTGGAGGAGTTCAAGAATGAAGTGATCTTCATAGCCAAACTGCAACATAGGAACCTTGTGAGACTCTTGGGTTGCTGTATTGAGGAAAATGAAAAGCTGCTTGTGTACGAGTACATGCCAAATTCTAGCCTTGACTCTCACTTGTTCAATAAGGAAAAAAGAAAGCAACTAGATTGGAAGTTAAGACTGAGCATTATCAATGGAATTGCAAAAGGACTTCTATACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGATCTGAAAGCCAGCAATGTTCTTCTGGATCAAGACATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAACATTTGAAAAAGGCCAGAGTCAGGAAAATACAAAAAGAGTTATGGGCACCTATGGTTACATGGCTCCAGAATATGCAATGGAAGGGTTGTATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTACTAGAAATCATATGTGGGAAAAGGAATAGTGGATTCTATCTTTCAGAACATGGTCAAAGTCTTCTTGTATATAGTTGGAGACTTTGGTGTGAAGGAAAAAGCTTGGAATTGTTGGATCAAATACTGGAAAAGACATATAAAACCAGTGAAGTTATAAGGTGCATACACATTGGTTTGTTATGTGTTCAGGAAGATGCAGTAGATCGACCAACCATGTCGACGGTTGTTGTCATGCTGGCAAGTGACACAATAGCCCTTCCAAAACCTAATCATCCTGCCTTTTCAGTTGGAAGGCAGACCAAAGAAGAAGAATCAACATCAAAAACTTCCAAGGATCCTTCTGTAAATGAAGTAACAGTATCAAATATTTTACCCAGGTAG	1977	0.4031	MATKALITIQSFLGFMTAFTMASAQSPNYMNDDCHNSTTQQALTLTYQTNLHNTLLWLSSDAATSKGYNHTTTGNGTVDAVYGLYDCRGDVTGSFCQFCVSTAASEILQRCPNKSSAVIWYNYCILRYSNHNFFGNLTTTPSWQIVGSKNTTNPEELQKSEDYMQSLRREATVETNKLYAIGGFNLSNGEERYGLVQCSRDLTNVECSQCLEAMLVKVPQCCAANLGWQVLAPSCLIKYDDYMFYQITNQTSSLLPNPAKKGGKIKSTTLIIIIVSVLVALALVVCSIYYLWRQYLSNKDGLLSVNTPTSFHGHVQREDALTVDLPTIPLIWIRQSTNNFSELDKLGEGGFGPVYKGNLEDGTEIAVKRLSKTSGQGLEEFKNEVIFIAKLQHRNLVRLLGCCIEENEKLLVYEYMPNSSLDSHLFNKEKRKQLDWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQDMNPKISDFGLARTFEKGQSQENTKRVMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNSGFYLSEHGQSLLVYSWRLWCEGKSLELLDQILEKTYKTSEVIRCIHIGLLCVQEDAVDRPTMSTVVVMLASDTIALPKPNHPAFSVGRQTKEEESTSKTSKDPSVNEVTVSNILPR*	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g2566	658	ProSiteProfiles	Gnk2-homologous domain profile.	139	244	IPR002902	-
	Gso6g2566	658	Pfam	Domain of unknown function (DUF3403)	613	658	IPR021820	GO:0004674
	Gso6g2566	658	Gene3D	Transferase(Phosphotransferase) domain 1	416	618	-	-
	Gso6g2566	658	MobiDBLite	consensus disorder prediction	643	658	-	-
	Gso6g2566	658	SUPERFAMILY	Protein kinase-like (PK-like)	326	630	IPR011009	-
	Gso6g2566	658	PANTHER	PROTEIN KINASE DOMAIN	19	655	-	-
	Gso6g2566	658	Pfam	Salt stress response/antifungal	34	130	IPR002902	-
	Gso6g2566	658	Pfam	Salt stress response/antifungal	158	242	IPR002902	-
	Gso6g2566	658	Pfam	Protein tyrosine and serine/threonine kinase	344	609	IPR001245	GO:0004672\|GO:0006468
	Gso6g2566	658	MobiDBLite	consensus disorder prediction	622	658	-	-
	Gso6g2566	658	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	19	655	-	-
	Gso6g2566	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Gso6g2566	658	Gene3D	-	26	133	IPR038408	-
	Gso6g2566	658	Gene3D	-	140	244	IPR038408	-
	Gso6g2566	658	ProSiteProfiles	Gnk2-homologous domain profile.	28	133	IPR002902	-
	Gso6g2566	658	ProSiteProfiles	Protein kinase domain profile.	340	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso6g2566	658	SMART	serkin_6	340	584	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso6g2566	658	CDD	STKc_IRAK	346	611	-	-
	Gso6g2566	658	Gene3D	Phosphorylase Kinase; domain 1	307	415	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g2566	Gso-Chr6	47409904	47417298	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g2566	4	658	Receptor kinase-like Gene Family	AT4G05200	42.836	0.0	530

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso6g2566		PK_Tyr_Ser-Thr	7.6e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g2566	-		-	ahf:112718031	898.656