Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2562 ATGGCATCATCACACTTTTTGGAAGGTTGTCCCTCCGAAGGCTCTAGCATCTCTGCCACCTCCGAAGGCATTTCCCATAAACCAAGTGCTGAAGAAGAGAAGAATCATGATGAGGTGACAACTATGAAGGAGAAGGATGTCAAATCTGAACAAGATCAGGCTTCCAATTCCAATTCCCACATGGTGTTGGATTTTGTTAAGCTATCCAAGGATTATTCAATTCGAGGGTCGAAAGTGGAATTGGATTTTTTCAATCCAATGAGCTTGGGGGGTTCATCTTCTTCTAGGACTAACAACAATGAAGGAAGAGATGAGAACAACAATGAAGAGAAATCATCTGAGGCTAAGACTTTTTCTTGCAATTTTTGCAAGAAAGAGTTTTCTTCATCACAAGCTTTGGGAGGACACCAAAATGCTCACAAGCAAGAGCGTGCTCTTGCCAAGCGTCGCCAAGGGATTGATGCTGGTGCTTTTGGCAACCCTCATTTTCTTTATTACCCTTATCATCCCACACACTCCTTTTATGGATCATATAATAGGGCACTTGGGGTTAGAATGGAGTCTATGATCCACAAGCCTTCGTATCCTTCACCCTCACTAGGTTTTAGGTTTGGTCAAGGGTGGTCAAGATCACAAGAGATGCTAAACCCTTCTCTTGATAGATTGAGGATGGAGACTTTGCATGCAAATAGTGGAACTAGGATCCTAGGGAGTGATAATACTAATTTGAGGACACAAGATGATCGTGGTACTATTGGGCACAACATTCCATTCCTTGGAGAATCTTCTACAAATGTTGTTACGAAATCAAACTCAGCCCCATTGAGTAACTTGGGTGGTGATCATCCCAAGCAAGAAGCACCCTCTAGTCCTGATTCTTCTGATGAGATTGATTTGTCACTTAAGCTTTAA 912 0.4232 MASSHFLEGCPSEGSSISATSEGISHKPSAEEEKNHDEVTTMKEKDVKSEQDQASNSNSHMVLDFVKLSKDYSIRGSKVELDFFNPMSLGGSSSSRTNNNEGRDENNNEEKSSEAKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKRRQGIDAGAFGNPHFLYYPYHPTHSFYGSYNRALGVRMESMIHKPSYPSPSLGFRFGQGWSRSQEMLNPSLDRLRMETLHANSGTRILGSDNTNLRTQDDRGTIGHNIPFLGESSTNVVTKSNSAPLSNLGGDHPKQEAPSSPDSSDEIDLSLKL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2562 303 SUPERFAMILY beta-beta-alpha zinc fingers 115 145 IPR036236 -
Gso6g2562 303 MobiDBLite consensus disorder prediction 257 278 - -
Gso6g2562 303 MobiDBLite consensus disorder prediction 233 249 - -
Gso6g2562 303 Pfam C2H2-type zinc finger 118 142 - -
Gso6g2562 303 MobiDBLite consensus disorder prediction 233 303 - -
Gso6g2562 303 Gene3D Classic Zinc Finger 94 155 - -
Gso6g2562 303 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Gso6g2562 303 MobiDBLite consensus disorder prediction 26 51 - -
Gso6g2562 303 MobiDBLite consensus disorder prediction 1 56 - -
Gso6g2562 303 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 303 IPR044246 GO:0009788
Gso6g2562 303 MobiDBLite consensus disorder prediction 87 101 - -
Gso6g2562 303 MobiDBLite consensus disorder prediction 85 115 - -
Gso6g2562 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Gso6g2562 303 MobiDBLite consensus disorder prediction 9 25 - -
Gso6g2562 303 PANTHER ZINC FINGER PROTEIN 3-LIKE 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2562 Gso-Chr6 47367545 47368456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2562 108 303 C2H2 Transcription Factor Family AT5G10970 37.186 4.20e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g2562 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2562 - - gmx:102663393 598.586