Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2561 ATGCGGAAGAAGCTCGATACCCGTTTCCCCGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTCGGAAAGATAGCGTTGGCAGTTCCTGTTTTAGTTTCTAAAGCTCTGGAGTTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAGTAACCCTTCAGAGAGGAGCAAAGACCATGAATTCATTGCATTTGAAACATTGTGTACAAAGTTATAGTGTTTTTGACTTTCTAAGAGACATTGTCAGCAGAGTTCCTGACTATGGGCATGGCCATGGCCATGGCCATTCAGAGGCTGGAGCTGATGATCGTGCACTTCCAAAGAGAAGGAAAGCTGTTGGTGACGACGGCAATGACAGTGATGAAGAGGCTAAGAGGAGTAAGATGCGTGAGCTGGGCCACACTGGCACTCCTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGGGCTCGAACTATTGAAAGAGATATCTGTCATCAGCAGGTTGAATCCGAGCCTTGCACCTCTATTCTGCAAAGTAGCAATGATATTCCTAACACTAGTGTGCCAATAGATAATGGTCCACAATCCAAGGAGTTACCAAAGGAGAACTTTGTGATTTCTGAGGAAAGTACTCAATCTTTCCGCAACATTGATCTGAATGCTAACTTAAATGAAAACGAAGACAAAAATGCTGGCACAGCTGTTCCGGCTTCATTGCCTGAGCCCACTTCCATGGACACTGCCATGGAGATTAAACATGAAGAAATTCCAGGCTGGTCCCTATCTGATGTGGACAAGATGGGCATTGACACTATGCAGCTTGCAAACCTAGGTAGTCGACTAGAAGAGGACGAAGAAGATTATGACGAGGAAGGGTAA 879 0.4608 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEVTLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHGHGHSEAGADDRALPKRRKAVGDDGNDSDEEAKRSKMRELGHTGTPGRGRGRGRGRGRGRGARTIERDICHQQVESEPCTSILQSSNDIPNTSVPIDNGPQSKELPKENFVISEESTQSFRNIDLNANLNENEDKNAGTAVPASLPEPTSMDTAMEIKHEEIPGWSLSDVDKMGIDTMQLANLGSRLEEDEEDYDEEG* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2561 292 PANTHER HISTONE SUPERFAMILY PROTEIN 1 291 - -
Gso6g2561 292 MobiDBLite consensus disorder prediction 176 193 - -
Gso6g2561 292 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Gso6g2561 292 MobiDBLite consensus disorder prediction 176 197 - -
Gso6g2561 292 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Gso6g2561 292 Coils Coil 274 292 - -
Gso6g2561 292 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 291 - -
Gso6g2561 292 SUPERFAMILY Histone-fold 4 90 IPR009072 GO:0046982
Gso6g2561 292 MobiDBLite consensus disorder prediction 91 160 - -
Gso6g2561 292 MobiDBLite consensus disorder prediction 91 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2561 Gso-Chr6 47353988 47358506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2561 1 281 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.492 4.41e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso6g2561 CBFD_NFYB_HMF 4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2561 K21752 - gmx:100810093 530.406