Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2555 ATGGGGTCTATGAGTAACTCAAATCCAAATCCATGGACTCCAAAGGATTGTTCTGAAGGAATTTGTAGCATCTATTGTCCTCAGTGGTGTTACATAGTGTACTCTCCTCCTACTCCAATTCTACTAGGTGATGGTGATGATGACCCTTCTGGATTTGAATTCTCTCCTCTCATAGTTGCTGCGATTGGAATCTTGGCTAGTACTTTCATCTTGGTCACTTACTATACCATTATCTCAAGGTTATGCAGGCAAAGACACAACACAAATGATCCAACAGAAGACGATGGAAACAGCGAATTGGCGCGAATTTCTTCGTCTGCCAATTCTGGTTTGGATGAGGCTCTCATCAAATCCATCAGGGTTTGCAAGTACAACAAGGGTGGTGGGTTGGTGGAAGGTCACGATTGTTCGGTTTGTTTGATCGAGTTCCAAGAGAATGAAAACTTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATACTTGGCTCAAGTCTCATGCTACTTGCCCTTTGTGTCGTTCTTCTGTCACCGCTTGTCCAAATCCGAATCCAAATTCTTCCATGGAACCCCCACCAAGAGTCATTGTTAATGCCTTGGGACACCAACTTAGGAGTAACCATGTTGTTGTTGTTGAGAGTTCTGAGGAACAACAGAAAGATGGTTAG 681 0.4332 MGSMSNSNPNPWTPKDCSEGICSIYCPQWCYIVYSPPTPILLGDGDDDPSGFEFSPLIVAAIGILASTFILVTYYTIISRLCRQRHNTNDPTEDDGNSELARISSSANSGLDEALIKSIRVCKYNKGGGLVEGHDCSVCLIEFQENENLRLLPKCNHAFHLPCIDTWLKSHATCPLCRSSVTACPNPNPNSSMEPPPRVIVNALGHQLRSNHVVVVESSEEQQKDG* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2555 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 184 IPR013083 -
Gso6g2555 226 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Gso6g2555 226 SUPERFAMILY RING/U-box 130 193 - -
Gso6g2555 226 Pfam Ring finger domain 135 178 IPR001841 -
Gso6g2555 226 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 203 IPR044675 -
Gso6g2555 226 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 12 203 - -
Gso6g2555 226 CDD RING-H2_PA-TM-RING 135 178 - -
Gso6g2555 226 SMART ring_2 136 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2555 Gso-Chr6 47284868 47285891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2555 7 187 C3H Transcription Factor Family AT5G17600 56.771 8.48e-64 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2555 - - gmx:100809014 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1054 4 16783408 16784744 Gso6g2555 6 47284868 47285891 GST