Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2554 ATGCCTCCGAGGAAGAAGAAGCTCAATCTACAACAACAACAACAACAACAACAACAACAACCACCTTCCAAGTTCGGCATTCAGCACTTCTTCGAACGCGCTTCTCAGAAGCAGCAACATCTCCAACCCCACACCACCACCACCACCACCACCGCCAATGCACCACCACCAGAAGAACAACAACCACCCAACGAGGTGTCTCCGCAGACACGCTTCAAATTCTCACCTGGGATGTTGGTGAAGCAGAGCCAGGATGAGGTGGTTGACGAGGTTACCTGGAAGATATCTCCTGTCAATGAGAGGCTCCAGGCGGTTTCGAAATACACGCCGGAAGTGATTAAAGCCTTGGCCGCCTCTTCCAAAATCAACTTGTCGCCAATTCGCAGCAGCGGCAACAAGGAGACTTGTCTTGATAAGGTTATTACTTCGCCGACTCCCAAGGTGCCATTGAGCTTCAAAAGGATAAGCTCGGCCCGCGATGTGAGTGGACAGAGCCCCTTCAGAACTCCACCATCGTATCGCCCTGACAAGGTGCAGCGTGTCAAGGATATTGAACGCATCAGACCATGCGACAATCTTTTATTAAGGCAGAACAAAAAGGCATTGCTTGAACTGTTAGATCAAGTTGAGGATGCCATTGCTGTTGATGATGTTACAGTTTGTAATAACAACACTTATTCCTTTAAAGTTCCGCAAGATCTAATTGCTAATGAGCTTCCTGTCAAAGTCAATCCTACAGTAGAAAGGACTAAATCAGATATACCTAAAGAGGTTGTTGATGTCTTCAGTTCTAATTATTTGGTTTTGGAGGTATCTGAACTTAGGTCTGCTGATTCATCTGATGCCCCATGCTCATCATACAAGGTGCTTCGTTTGCTAAATGAACAAACCGGAGAAGAGAGGGCTGTAAACCTTCATAATGAGTGGTTTGATAGTGTAATTGCACCTGGAGATACTGTGCACATAATCGGTCAATTCGACCTGGGGGGAAATTGTGATATTGATCACAATAAAAACTTTTTGATTGTACACCCAGATATTCTAGTGTCTGGAACACGGGTTGCTGCCAGTTTAAGTTGCCCAAGGAGAACTGTCTTAGACGAGAGGTTAAAAAACAATGATTACTCAATTATAGCATTAACTGGAACGCTGCTGCACCAAATTTTTCAGGCTGGGCTTACGAAAGAAAATCCTACAGTAAATTTCATGGAAGATTATGCAGAAGTGGTATTACAGAGAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAAAATGATGTTCGCAAAACCTTGAGAGATGCTATTCCTAGAATATTGAGTTGGATCAAGCAGTTCAAAAATACGAAGGAAAGAAAAGACCTCAGTGTCAATTTTGGATTTGATGACGAGCCAAAGAATGTTGGCATATCAGAGGTAATTGATATTGAAGAGATGGCTTGGGCTCCAAAATATGGTTTGAAAGGAATGATTGATGCTTCAGTCAGAGTGAAAATTCAATCACAAAAAGATGATCCGGAGGAAAAGATCATGCCATTAGAGTTCAAAACTGGAAAAGCACCATACAGCCAGTCATCAGTAGAGCACAGGGCCCAAGTAATTTTGTACACTCTCCTAATGTCTGAAAGGTATCAGAAGGCTGTTGATTCTGGTCTTCTATACTATCTCCGATCCGACCAGACACAGGGTATTGTGGTTCAAAGATCTGACTTAACTGGGCTTATAATGCGGCGAAATGAACTAGCAAGTGATCTTCTTAAGGCATTAACTTTGCAACAACTGCCTCCAATGTTACAGAGTCCTAGCATTTGCAAAGGTTGTCGCCATCTTAATGTGTGTAGCATTTATCATAAGGCACATGGTGGAAGCACAGAGAGCAGTGGGTTGGGAGAAGCTTTTGATTCTCTTAGTAATCACATGACATCTTCACATTCTAAGTTTCTCTGCCGTTGGGATCGCTTGATTGACTTAGAAGCTAAAGAGACTGAGCTTTTAAAGAAAGGGGTGTTGCAATCACATAGATTAAACAGTGGTGGCCTTTCTTCTATTGTTCTTGATGCTTCACAAGGAATACCTCATCAGAAATCTCTCAATGATAATAAATTCGTTTATCATTTCATACAACAAGATTCTTCTTCTAGCCTCTCTGGAGTTTTTGATGCGTCTTCTAGTGCCTCGTTGAAAAATGATTTAGATTTCACACTTAGAAGTGGAGATCATGTGATACTGAGTAATCAATCTAGCCATCAAATTATTGCTAAAGGGGTGATATCTGATATTAGTCCGATCCATGTATCTGTTTCCTTTTCCAAGCGTTTACGAATTCCTGGGAGTTCTTCCACTGCACATGATCTCAGTCAGCAGGTTTGGAGAATTGATAAGGATGAATATGTGACTTCATTTGCTATTATGAGGTTTAATCTTGTACAGCTTTTTCTACAAAATGATCAAAGTGCTCATCTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGATTTGACAGTGGATCTTTAGTTAGTCAGGATCCAGCGATATCCTATGTTTGGTCAGAGAAGAGTTTGAATGATGACCAACGTGGAGCAATTCTCAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACATCCACATTGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGGACATCCATTTTGCTAACTGCGTATACAAATTCTGCTGTCGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTGTACGAATTGGAAGACATGAAGTAGTGAATGAGGAGGTTAGAGAACACTGCCTCTCAGCAATGAATGTACAAGGTGTTGAAGATATCAAAATAAGGTTGGAACAAGTCAAAGTTGTTGCAGTTACTTGTCTCGGCATTTCTAGTCCCTTGCTTGCCAACACGAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGTCCTCTAATATTTGCTTCGACGTTTGTACTTGTTGGGGATCATTATCAACTACCACCACTTGTTCAGAGTGCAGAGGCCCGAGAGAATGGCATGGGCATAAGTTTGTTCTGTAGGCTCTCAGAAGCACATCCAGAGGCTATTTCAGCTTTGCAGAGTCAGTATCGAATGTGTCAGGACATTATGGACCTTTCCAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATTTGAGGTAGCTAACTCAAAACTTGAGTTTTCAGGCTTAAACTGTGATTTGCCTTGGCTAGAAGATGTTTTGAATCCTCGAAGACCTGTTATATTTATTGACACTGACAAGTTGCCTGCTTTAGAGGCAAGAGATCAGAAGATTGTAAATAACCCTATTGAAGCTCAGATAATTGCTGAGGTTGCAAAGGAATTGGTAAAGAATGGAATCGGAAGTGAACACATTGGCATTATTACTCCCTATAATTCACAGGCAAACCTCATCCGGAATGCTGCTTCCATGACTTCCTTGGAGATACATACCATAGACAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTAAGGTCTACCGAAAACCCGACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGCGCTAAGAAAAAGTTGATCATGGTTGGATCTCGGAGAACTCTTCTTAGGGTTCCTCTATTGAAACTTCTCATTAAGAAGGTTGAGGAACAATCTGGAATTTTAACTGTGACTAAGAAGGATATCTATCGAAAAAGTGAGCTCAAGAGATGTTCTCAAATGAGATGA 3822 0.4158 MPPRKKKLNLQQQQQQQQQQPPSKFGIQHFFERASQKQQHLQPHTTTTTTTANAPPPEEQQPPNEVSPQTRFKFSPGMLVKQSQDEVVDEVTWKISPVNERLQAVSKYTPEVIKALAASSKINLSPIRSSGNKETCLDKVITSPTPKVPLSFKRISSARDVSGQSPFRTPPSYRPDKVQRVKDIERIRPCDNLLLRQNKKALLELLDQVEDAIAVDDVTVCNNNTYSFKVPQDLIANELPVKVNPTVERTKSDIPKEVVDVFSSNYLVLEVSELRSADSSDAPCSSYKVLRLLNEQTGEERAVNLHNEWFDSVIAPGDTVHIIGQFDLGGNCDIDHNKNFLIVHPDILVSGTRVAASLSCPRRTVLDERLKNNDYSIIALTGTLLHQIFQAGLTKENPTVNFMEDYAEVVLQRNIESLYACGVNENDVRKTLRDAIPRILSWIKQFKNTKERKDLSVNFGFDDEPKNVGISEVIDIEEMAWAPKYGLKGMIDASVRVKIQSQKDDPEEKIMPLEFKTGKAPYSQSSVEHRAQVILYTLLMSERYQKAVDSGLLYYLRSDQTQGIVVQRSDLTGLIMRRNELASDLLKALTLQQLPPMLQSPSICKGCRHLNVCSIYHKAHGGSTESSGLGEAFDSLSNHMTSSHSKFLCRWDRLIDLEAKETELLKKGVLQSHRLNSGGLSSIVLDASQGIPHQKSLNDNKFVYHFIQQDSSSSLSGVFDASSSASLKNDLDFTLRSGDHVILSNQSSHQIIAKGVISDISPIHVSVSFSKRLRIPGSSSTAHDLSQQVWRIDKDEYVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSLVSQDPAISYVWSEKSLNDDQRGAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEVVNEEVREHCLSAMNVQGVEDIKIRLEQVKVVAVTCLGISSPLLANTRFDVCIMDEAGQTTLPVSLGPLIFASTFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPEAISALQSQYRMCQDIMDLSNALIYGDRLRCGSFEVANSKLEFSGLNCDLPWLEDVLNPRRPVIFIDTDKLPALEARDQKIVNNPIEAQIIAEVAKELVKNGIGSEHIGIITPYNSQANLIRNAASMTSLEIHTIDKYQGRDKDCILVSFVRSTENPTSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLLRVPLLKLLIKKVEEQSGILTVTKKDIYRKSELKRCSQMR* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2554 1273 CDD DEXXQc_DNA2 853 1053 - -
Gso6g2554 1273 Pfam AAA domain 1031 1230 IPR041679 -
Gso6g2554 1273 MobiDBLite consensus disorder prediction 7 25 - -
Gso6g2554 1273 Gene3D - 350 614 IPR011604 -
Gso6g2554 1273 Pfam Domain of unknown function DUF83 505 614 IPR022765 -
Gso6g2554 1273 PANTHER DNA2/NAM7 HELICASE FAMILY 129 1248 IPR045055 -
Gso6g2554 1273 Gene3D - 779 1051 IPR027417 -
Gso6g2554 1273 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 129 1248 IPR026851 GO:0017108|GO:0017116|GO:0033567
Gso6g2554 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 1238 IPR027417 -
Gso6g2554 1273 Pfam DNA replication factor Dna2 295 497 IPR014808 -
Gso6g2554 1273 Coils Coil 192 212 - -
Gso6g2554 1273 CDD SF1_C_Upf1 1054 1232 IPR041679 -
Gso6g2554 1273 MobiDBLite consensus disorder prediction 32 55 - -
Gso6g2554 1273 Pfam AAA domain 957 1021 IPR041677 GO:0004386
Gso6g2554 1273 Pfam AAA domain 854 945 IPR041677 GO:0004386
Gso6g2554 1273 MobiDBLite consensus disorder prediction 1 71 - -
Gso6g2554 1273 Gene3D - 1052 1260 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2554 Gso-Chr6 47259125 47283983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2554 1 995 Core DNA Replication Machinery Family AT1G08840 53.839 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2554 K10742 - gmx:100799415 2437.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1056 4 16829579 16831162 Gso6g2554 6 47259125 47283983 GST