Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2549 ATGGCTGTGATGCTGTGTGGAGGAGCTTCATCTTCTGCTTTTGGCCGCGGATGGACTTATGATGTGTTCTTGAGTTTCAGAGGTGAGGATACAAGGAGAACCTTCACAGGCTCTCTATATCATGGTTTGCACCAAAGGGGTATCAATGTTTTCATAGATGATGAGAAGCTTAGGAGAGGGGAAGAGATATCCCCTGCTCTTATTGGAGCCATTGAAGAGTCTAGGATTGCTATCATTGTGTTCTCTCAAAACTATGCATCTTCCACATGGTGTCTTGATGAGCTTGCAAAGATCCTTGAGTGTTACAAAACAAGAGGGCAACTTGTTTGGCCGGTTTTCTTCCATGTTGACCCTTCGGCGGTGCGCCATCAGAGAGGAAGTTTTGCGACAGCAATGGCTAAGCATGAAGACAGATTCAAGGGTGATGTGCAAAAGTTGCAAAAGTGGAAGATGGCCTTGTTTGAGGCAGCCAATTTGTCAGGTTGGACCTTAGAAAATGGGTATGAATTTAAGCTCATCCAAGAGATCATTGAGGAGGCCTCTAGAAAATTAAATCACACCATTTTGCATATTGCTGAGTACCCAGTTGGAATAGAGAATCGCATATCAGAATTGAAATTACTTTTGCATATCGAACCCGGTGAAGATATTCGTGTCATTGGAATATATGGACTTGGAGGCATAGGTAAAACCACAATTGCAAGGGCTTTATACAACTTGATTGCTGGCCAGTTTGAAGCTACAAGTTTCCTTACTGATATAAGGGAAAGTTCAAATCAAAGACAAGGTTTAGTGCAACTTCAAGAAACACTTCTTTTTGATACAGTTGGGGACAAGAACATCAAGCTAGGAAGTATTTATAAAGGAATCCCTATCATAAAGAAAAGGCTATGTTGTAAAAAAGTACTTTTGATTCTTGATGATGTTGACAAGTTGGAGCAGCTTCAAGCATTAGCAGGCGGACGCGATTGGTTTGGTTTTGGAAGTGTGATCATTATAACAACAAGAGATAAGCACTTGCTAGCTGCTCAGCAGGTTGACAAAACATATGAAGTAAAGAAATTAAACCATGATGAAGCTTTTGATCTCTTCACTTGGAGTGCCTTCAAAAGGAAGGCACCTGATGCAGGCTATTTCGACATTTCTAACCGTGTGGTGCTCTATGCTGAGGGGCTTCCACTGGCTTTGAAAGTAATGGGTTCTAATTTGTTTGGTAAAACAGTGGAAGAATGGAAATCTGCACTGGGAAAATATGAAAAGATTCCCAACAAAGAGGTTCAGAATGTACTTAGAGTAACTTTTGATAATCTAGAAGAGAATGAGAAGGAAATTTTCCTTGATATAGCATGTTTTTTCAAGGGGGAGACAATGGAATATATAGAAAAGACTCTGCAAGCATGTGGATTGTATCCAAAGTTTGGTATTAGTGTACTTGTTGATAGATCTCTTGTTAGTATTGATAAATATGACAGATTGAGAATGCATGATCTGATACAAGACATGGGTAGGGAAATTGTTAGAGAAGTTTCACCATTAGAGCCTGGAAAGCGGAGTAGACTATGGTATCATGAAGATGTTTTCGAAGTACTCTCTGAAAATACGGGGACTTACAGAATTCAAGGCATGATGGTGGACCTCCCTGATCAATATACGGTACACTTGAAAGATGAATCCTTCAAAAAGATGAGAAACCTTAAAATTCTTATAGTTCGAAGTGGACACTTTTTTGGAAGCCCCCAACATCTTCCAAACAATTTAAGGTTGCTTGATTGGATGGAATATCCTTCATCATCTCTACCATCTAGCTTTCAACCTAAGAAACTTGTTGTACTCAACTTGTCACACAGTCGTTTTACAATGCAAGAGCCATTCAAGTATTTGGATTCTTTGACTTCAATGGATTTGACTCACTGTGAATTGTTGACAAAACTACCTGACATTACTGGAGTCCCAAATTTAACAGAACTACATCTTGACTATTGTACAAATTTAGAAGAGGTTCATGACTCTGTTGGATTCCTTGAGAAACTTGTTGAGTTGAGGGCTTATGGATGCACCAAGCTTAAAGTTTTTCCAAGTGCCCTCAGGTTGGCATCATTGAGAAGTCTTATCCTCAATTGGTGCTCAAGCCTTCAAAATTTCCCTGCTATTTTGGGGAAAATGGATAACCTCAAATCCGTTTCTATAGATAGCACTGGTATAAGAGAATTGCCTCCTTCCATTGGAAACCTTGTTGGACTTCAAGAATTAAGCATGACATCTTGCTTAAGCCTCAAGGAGCTACCTGACAACTTTGATATGTTGCAAAATCTTATAAACCTTGATATTGAAGGTTGTCCGCAACTTCGAAGTTTTTTGACAAAGTTGAGAGACATGGGACAATCTACTCTTACCTTTGGTAACATTCAGTCACTGAATCTAGAAAACTGTGGCCTTATAGATGAAGATCTTCCCATAATTTTCCATTGCTTCCCAAAAGTATCATCATTAGTCCTTTCAAAAAATGATTTTGTAGCTCTTCCAATCTGCATACAAGAATTTCCTTGCTTGGAATTACTTCACTTGGACAACTGCAAAAAACTCCAAGAAATTCCAGGATTTCCTCCTAACATACAGTACATTAATGCAAGAAATTGTACATCATTGACTGCAGAGTCATCAAACTTATTATTGAGCCAGGAAACTTTTGAGGAATGTGAAATGCAAGTTATGGTGCCTGGAACAAGGGTTCCAGAATGGTTTGATCATATCACCAAAGGAGAATATATGACATTTTGGGTACGTGAAAAGTTTCCAGCAACTATCTTATGCTTTGCTCTCGCGGTAGAGAGTGAAATGAAGGAGAGTTTCGATTGTGAAATTCGCTTCTATATAAATGGTGATGAAGTTTATGAATTGGAAATGCCAAGAAACTTTTCAGATATGGTGACAGATCATGTGTGGCTCTATGACTTGAGAACTCATCCATCCATTCAGTGGCGCAGTCTTGATTTATATCTAATGGATGACTGGAATCAGGTTGAGATTTCATGCGAGAAAATACTTGGAGCATCAAATGTGACTGTGAGTTGGTGTGGAGTTCATGTTATTAAGCAAGAAACTAACATGAAGGATATACTATTTGCAGATCCTGATCCAGATTTAGATTCAAGCTTACACTCTGAGAAGATTGATATAGATTTGGATACAGATGGTGAAGAAAGTACAAAGTCAATTGAAGATTCCCAATATTGCAACTTAGTAGATGATAACTGCTACATTAACTTTGAGACACCGGATAGACAAATGGAGGAGTGGTGGAATATAAGTAAAGAGGCAGAAAATAATAGAGTCGTATGCCACACTGAAATGGATCAGAACCAAGATAAGAATTTATTGCCTGAAAAGACATTGTATAGGGTTACTGAAGATTCATTGTTTTCATTGTATCTTGAAGACATTGGTAGTGTCAAAGCTTCCGGATCAAATTCAAGCATACTAGTTGTTGATCATCCAGTGAAAAATCAACCACAATCTCAAGTCACAGGTTTTATACAGACACCAAATGTTCAGGAACCAAGGACTACAGTATCCATGGATCACAAAGTTACTAGAGGGGAGTCACCTCAAAAGACCAACTCCACCATGGAGCTGCCAACAACCATTGACTCTCTGAAAAAGCAAACCAATTTGACTATAAATGATGCAGACATGGAAGCATTCTATGCTGTTCTGGATGCTGAGACCTCTGACTCCAGAGTGGTTTCTAAATTGGCCCACAAAATTCCAAGCGAAGAGACCAAGAAAGCATTGAAGACATTTCAAGACTTTGTGACCAAAGACTTTTCTGTTTTGTTAGGCCCTAGTGAGTACAGTACCATGAAAGATACCTTGGACTACCTTACCAATTTACCAGCAGAAGATGGAATATCAGTGGAAATAAGATCGTTGGTAATACAAGTTTCAAGACAGTTCACTCATTGGAGTAAGGATTACACATATGAAAGCAAGAAACTAGAGTCTACCACAGCCAAGTTGTTGAAAGCTGATGAACTAGAAGAAGGTCTTGAAGCTAATAAGACTCACTTCAAGGAAGTCATGTGCTTGGAAAATGAGTTGTGCAGTGAGTTGGCCTATTTGGAGCAAAGAAAGAAGGAGCTAGAAGAACAAATAAATGCTGTCAAATCTAACATCTCTGCTTCACAAGCAGCTAGAAACATGGCTAGTCAAAGAAAGAGAGAAATCTTTGGGGAAGCAAAGATTCTGAAAGCTCAAAGAGATGGGTTAAGAGAACAAATGCCACACTTGAGAGATGAGCAGGAATTGGCAAAGAAAATTAAGGCAAATATCAGAGAAGAATGGTCAAAGCTTGGAGAAAAGTTTAACAACATCTTAAGGCATGAAGGGTTTGATTAA 4395 0.3889 MAVMLCGGASSSAFGRGWTYDVFLSFRGEDTRRTFTGSLYHGLHQRGINVFIDDEKLRRGEEISPALIGAIEESRIAIIVFSQNYASSTWCLDELAKILECYKTRGQLVWPVFFHVDPSAVRHQRGSFATAMAKHEDRFKGDVQKLQKWKMALFEAANLSGWTLENGYEFKLIQEIIEEASRKLNHTILHIAEYPVGIENRISELKLLLHIEPGEDIRVIGIYGLGGIGKTTIARALYNLIAGQFEATSFLTDIRESSNQRQGLVQLQETLLFDTVGDKNIKLGSIYKGIPIIKKRLCCKKVLLILDDVDKLEQLQALAGGRDWFGFGSVIIITTRDKHLLAAQQVDKTYEVKKLNHDEAFDLFTWSAFKRKAPDAGYFDISNRVVLYAEGLPLALKVMGSNLFGKTVEEWKSALGKYEKIPNKEVQNVLRVTFDNLEENEKEIFLDIACFFKGETMEYIEKTLQACGLYPKFGISVLVDRSLVSIDKYDRLRMHDLIQDMGREIVREVSPLEPGKRSRLWYHEDVFEVLSENTGTYRIQGMMVDLPDQYTVHLKDESFKKMRNLKILIVRSGHFFGSPQHLPNNLRLLDWMEYPSSSLPSSFQPKKLVVLNLSHSRFTMQEPFKYLDSLTSMDLTHCELLTKLPDITGVPNLTELHLDYCTNLEEVHDSVGFLEKLVELRAYGCTKLKVFPSALRLASLRSLILNWCSSLQNFPAILGKMDNLKSVSIDSTGIRELPPSIGNLVGLQELSMTSCLSLKELPDNFDMLQNLINLDIEGCPQLRSFLTKLRDMGQSTLTFGNIQSLNLENCGLIDEDLPIIFHCFPKVSSLVLSKNDFVALPICIQEFPCLELLHLDNCKKLQEIPGFPPNIQYINARNCTSLTAESSNLLLSQETFEECEMQVMVPGTRVPEWFDHITKGEYMTFWVREKFPATILCFALAVESEMKESFDCEIRFYINGDEVYELEMPRNFSDMVTDHVWLYDLRTHPSIQWRSLDLYLMDDWNQVEISCEKILGASNVTVSWCGVHVIKQETNMKDILFADPDPDLDSSLHSEKIDIDLDTDGEESTKSIEDSQYCNLVDDNCYINFETPDRQMEEWWNISKEAENNRVVCHTEMDQNQDKNLLPEKTLYRVTEDSLFSLYLEDIGSVKASGSNSSILVVDHPVKNQPQSQVTGFIQTPNVQEPRTTVSMDHKVTRGESPQKTNSTMELPTTIDSLKKQTNLTINDADMEAFYAVLDAETSDSRVVSKLAHKIPSEETKKALKTFQDFVTKDFSVLLGPSEYSTMKDTLDYLTNLPAEDGISVEIRSLVIQVSRQFTHWSKDYTYESKKLESTTAKLLKADELEEGLEANKTHFKEVMCLENELCSELAYLEQRKKELEEQINAVKSNISASQAARNMASQRKREIFGEAKILKAQRDGLREQMPHLRDEQELAKKIKANIREEWSKLGEKFNNILRHEGFD* 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2549 1464 SUPERFAMILY "Winged helix" DNA-binding domain 425 530 IPR036390 -
Gso6g2549 1464 Pfam TIR domain 20 187 IPR000157 GO:0007165
Gso6g2549 1464 Gene3D - 354 438 IPR042197 -
Gso6g2549 1464 Gene3D Ribonuclease Inhibitor 542 703 IPR032675 -
Gso6g2549 1464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Gso6g2549 1464 Gene3D Ribonuclease Inhibitor 704 900 IPR032675 -
Gso6g2549 1464 Coils Coil 1412 1432 - -
Gso6g2549 1464 Coils Coil 1363 1397 - -
Gso6g2549 1464 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 1437 IPR044974 GO:0006952
Gso6g2549 1464 Gene3D - 189 351 IPR027417 -
Gso6g2549 1464 PRINTS Disease resistance protein signature 219 234 - -
Gso6g2549 1464 PRINTS Disease resistance protein signature 296 310 - -
Gso6g2549 1464 PRINTS Disease resistance protein signature 389 403 - -
Gso6g2549 1464 PRINTS Disease resistance protein signature 625 641 - -
Gso6g2549 1464 SUPERFAMILY L domain-like 516 890 - -
Gso6g2549 1464 Pfam NB-ARC domain 209 423 IPR002182 GO:0043531
Gso6g2549 1464 Gene3D - 14 188 IPR035897 -
Gso6g2549 1464 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 1437 - -
Gso6g2549 1464 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Gso6g2549 1464 SMART till_3 19 159 IPR000157 GO:0007165
Gso6g2549 1464 ProSiteProfiles TIR domain profile. 18 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2549 Gso-Chr6 47219853 47226412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2549 14 792 WRKY Transcription Factor Family AT4G12020 32.094 1.23e-91 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2549 - - gmx:100798893 2908.24