Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2544 ATGTTCACGCCGGCTCCTCCACCCTCCGCCGTCACCGCCACCGAGGGACTCGGCTACGGCATTGCCATCGCCGTGAGCATCCTGGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGAATCAAAGCCAACGTCATCATCATCACTCGCCACCGTCACAACCACAGCATCAACAACAATAATAATAATAATAACAATAGTAGTTTTCGTGACGCCTCGGATGGGCCTGGCGTTGTGGTCCTGGGCATGGAGAAGCCCGCCATCGAGACCTGCTACGGGCCCAAGATCGTGATCGGAGAGAGCAAACGCCTGTCCAGGCCCAGCGACCAGGGCCCGTGCGCGATTTGCCTGAGCGAGTATCTTCCCAAGGAGACCATACGGTGCGTTCCGGAGTGCCGCCACTGCTTCCACGCTGAGTGCATCGATGAGTGGCTCAAGATGAGTGCCACGTGTCCCCTCTGCCGGAACTCCCCTGTGCCCTCGCCGCTGCCGACGCCGGCCGCCACGCCGCTGTCGGAGCTCGTTCCGCTGGCTTTCGACGCCAGGTGA 558 0.6129 MFTPAPPPSAVTATEGLGYGIAIAVSILVLISTIMLASYACVRIKANVIIITRHRHNHSINNNNNNNNNSSFRDASDGPGVVVLGMEKPAIETCYGPKIVIGESKRLSRPSDQGPCAICLSEYLPKETIRCVPECRHCFHAECIDEWLKMSATCPLCRNSPVPSPLPTPAATPLSELVPLAFDAR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2544 185 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 165 - -
Gso6g2544 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 163 IPR013083 -
Gso6g2544 185 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 13 165 - -
Gso6g2544 185 CDD RING-H2_EL5_like 116 158 - -
Gso6g2544 185 Pfam Ring finger domain 116 158 IPR001841 -
Gso6g2544 185 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Gso6g2544 185 SUPERFAMILY RING/U-box 109 163 - -
Gso6g2544 185 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2544 Gso-Chr6 47165014 47165627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2544 5 185 C3H Transcription Factor Family AT5G07040 51.934 1.45e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2544 - - gmx:100797289 316.235