Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2542 ATGGCATCTAGCTCAATGTCATCCACTGGCTCATGGAGTGCCAAGGACAACAAAGCCTTTGAAAGGGCTCTAGCTGTGTATGACAAGGACACGCCGGACCGTTGGTACAATGTTGCTAAGGCTGTTGGTGGTGGGAAGACTCCTGAGGAAGTCAAGAGGCACTATGAACTCCTCCTTAGGGATGTTAGGCACATTGAATCAGGGCAAGTGCCATTCCCATACAAGCAAAATGGAGGGTCTCAAGAGGAGAAAAGGCTGAGAAACATGAAGCTCCAGTAA 279 0.491 MASSSMSSTGSWSAKDNKAFERALAVYDKDTPDRWYNVAKAVGGGKTPEEVKRHYELLLRDVRHIESGQVPFPYKQNGGSQEEKRLRNMKLQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2542 92 MobiDBLite consensus disorder prediction 69 92 - -
Gso6g2542 92 SUPERFAMILY Homeodomain-like 10 67 IPR009057 -
Gso6g2542 92 ProSiteProfiles Myb-like domain profile. 4 59 IPR001005 -
Gso6g2542 92 CDD SANT 18 59 IPR001005 -
Gso6g2542 92 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gso6g2542 92 SMART sant 8 61 IPR001005 -
Gso6g2542 92 Gene3D - 2 72 - -
Gso6g2542 92 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 92 - -
Gso6g2542 92 ProSiteProfiles SANT domain profile. 7 63 IPR017884 -
Gso6g2542 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 92 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2542 Gso-Chr6 47150203 47151336 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso6g2542 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2542 - - gmx:100804396 187.578