Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2527 ATGGAGTGGCATAGAGGCCACACCATAGGCCAAGGCTCATCAGCCACCGTCTCCACCGCCACATGCCGTGGCGGTGTCTTCGCCGTCAAGTCAACGGAGCTTCCACAATCAGAGCCTCTAAAAAGGGAGCAAAAAATATTGTCCTCTCTAAGTAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATTACCATGGAGAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTCGGCACACTTGCCCAGGCGGCAACTCGCCGGTGCGATGGCCGACTCTTTGAGGAGTCCGTCATCGCACGCTACACGAGGCAAATCGTGCAAGGGCTGGACTATTTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTAATTGGTGAAGATGGAGCCAAAATTGGCGACTTGGGGTGTGCCAAGAGTGTGGCGGATTCCACGGCGGCGATCGGAGGCACGCCGATGTTCTTGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGCACTGTGATTGAAATGGTAACCGGTGGTGCACCATGGCCTAATGTGGAAGACCCTTTTTCAGCGCTTTACCATATTGCATATTCTAGTGAAGTGCCTGAGATTCCTTGTTTTCTGTCCAACGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCACAAGAGAGGTGGAAGGCTAGTGAACTATTGAAGCATCCATTTATTGAGAAAACATTATGTTTCAATAAGGAAGTTTTGGAGTCTAATTCAAGTTCCCCAACAAGTGTTCTTGAACAAGGCTATTGGAGTTCTATGGAAGAGTCAAAAAGTTTAGGCAATTTGATTCACAAAACTAGAAAGTTTGAAGCTTTGGCTGCTGGGAGGGTCAGAATGTTGGCCCTGTCTTCTGGGGTGCCATGTTGGGCAAGACATGATGATGATGATGAGAATTGGATCACAGCCAGAGGGAATGGGGTTGAAGGTTTTGTTCATTGTGGGTCATGGGTTGTCTCACTAGGTGTTGGTGAAAAGCAATGTTAG 1074 0.4888 MEWHRGHTIGQGSSATVSTATCRGGVFAVKSTELPQSEPLKREQKILSSLSSPYVVAYKGCDITMENNKLLFNLFMEYMPFGTLAQAATRRCDGRLFEESVIARYTRQIVQGLDYLHSKGLVHCDIKGANILIGEDGAKIGDLGCAKSVADSTAAIGGTPMFLAPEVARGEEQGCASDIWSLGCTVIEMVTGGAPWPNVEDPFSALYHIAYSSEVPEIPCFLSNEAKDFLGKCLRRNPQERWKASELLKHPFIEKTLCFNKEVLESNSSSPTSVLEQGYWSSMEESKSLGNLIHKTRKFEALAAGRVRMLALSSGVPCWARHDDDDENWITARGNGVEGFVHCGSWVVSLGVGEKQC* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2527 357 CDD STKc_MAPKKK 2 253 - -
Gso6g2527 357 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Gso6g2527 357 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Gso6g2527 357 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2527 357 PANTHER MAP KINASE KINASE KINASE 1 339 - -
Gso6g2527 357 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2527 357 SUPERFAMILY Protein kinase-like (PK-like) 3 280 IPR011009 -
Gso6g2527 357 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2527 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Gso6g2527 357 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2527 Gso-Chr6 47001104 47002444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2527 1 335 MAP Kinase Kinase Kinase AT1G05100 50.286 1.74e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso6g2527 Pkinase 3.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2527 K20716 - gmx:100794648 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0798 12 8350882 8352223 Gso6g2527 6 47001104 47002444 GST
Gso12g1625 12 39818115 39819421 Gso6g2527 6 47001104 47002444 PCT
Gso11g3238 11 48158073 48159315 Gso6g2527 6 47001104 47002444 PCT
Gso6g2527 6 47001104 47002444 Gso12g1625 12 39818115 39819421 PCT
Gso6g2527 6 47001104 47002444 Gso11g3238 11 48158073 48159315 PCT