Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2520 ATGGGGTTGATCAAAGCAGCAATTGGAGATGGAGTTTTAACATCAATGTGGGTTTTCATAATCTCAACATTGAGGATTGTCACAACTGAGGTGGCACTTTTCCTTGGCCTCCAACCTCTTTCACTTGCAGGCCTCATAATCAGCACCATCCTAAACAGTTTCTATGTCCTCACCATAAGCTTCATTGGAAGAATCTTAGGTGGTGCAAACTTCAACCCTTCAACAAGTCTTTCATTCTACACTGCAGGGTTGAGGCCTGACTCATCCCTTTCATCAATGGCAGTAAGGTTCCCTGCACAGGCATATGGTGGTGCTGTTGGCGTCAAAACCCTTCTTCTAGTGATGCCATCCAAGTATAATGACATGCTGAAAGGACCTTTCTTGAAGGTTGACTTGCATTCTGGGGCTGTTGCTGAAGGTGTTTTGACTTTCACTCACAACATGGCTATCTTCTTTGTCATGTTTAAGGGTCCTAGGAACCCTTTTGTGAAGGTGTATTTGCTCTCTGTGACAACTGCTGTTTTGGCTATTCTTGGTGGTGGATTCACTGGGCCTTCCATGAACCCTGCCAATGCCTTTGGATGGGCCTTTGTCAACAACAAGCACAACACTTGGGAGCAGTTTTATGTCTATTGGATTTGTCCCTTCATTGGGGCTTCCTCAGCTGCTTTGATTTTCAGGTCTATGTTTATGCCACCAATCAAGCAGAAGAAAGCTTGA 720 0.4472 MGLIKAAIGDGVLTSMWVFIISTLRIVTTEVALFLGLQPLSLAGLIISTILNSFYVLTISFIGRILGGANFNPSTSLSFYTAGLRPDSSLSSMAVRFPAQAYGGAVGVKTLLLVMPSKYNDMLKGPFLKVDLHSGAVAEGVLTFTHNMAIFFVMFKGPRNPFVKVYLLSVTTAVLAILGGGFTGPSMNPANAFGWAFVNNKHNTWEQFYVYWICPFIGASSAALIFRSMFMPPIKQKKA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2520 239 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g2520 239 PANTHER AQUAPORIN SIP1-1 1 239 IPR044222 GO:0015250
Gso6g2520 239 SUPERFAMILY Aquaporin-like 3 234 IPR023271 -
Gso6g2520 239 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g2520 239 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g2520 239 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g2520 239 Gene3D Glycerol uptake facilitator protein. 1 238 IPR023271 -
Gso6g2520 239 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2520 Gso-Chr6 46957980 46959055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2520 1 230 Major Intrinsic Protein MIP AT3G04090 43.478 6.52e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2520 K09875 - gmx:100797126 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0806 12 8443584 8444530 Gso6g2520 6 46957980 46959055 GST