Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2519 ATGGTTGAACGGAAGCAGTTCAAGACGAAGCTATGCGTTCTGTATCAGAGAGGTCGCTGCAATCGCCATAATTGCTCCTTCGCGCATGGGAGTGCCGAGCTTCGACGATTCTCTGCCTCGTATAGTGGGAGGAGAGACTATTTAGATAATGACTTGAGGGATAAACTTGACAGAAGGCATGTATCTCCTCGAAGGTACTCACCAACTCCAGATACTAGAGGCCGCCAGATCATCCGTGAATACAGTCCTACAAGATCTTTGGAGAAAAAAAGTGACAGGAGATATAGGAGAAAACAGGATATTACTGGCCAAAGTGATGTTTCTGGAAATTTGAAAGTCTCAGATAGAGTTCAAGATCGAGTTAAAGAAGGAAAATTGCTTTCCTCTGGTTCTAGGAATAATCTTGAGGAGAAGCTGAAGAAAGTAGATTCAGATATCAGCACTCTTCAGAACCGAAAATTCCAGCTAGAGGTCTTCCTTGATGAGAATGTTCAAGAAGTGGATAGTCTTAATTCTAGAATTCGGGAACTTGAAGGTCAATTATCCAAAGAGGATGAGGAGTGCAAAAGAATTACTTCAAGAGTAAGGAAATTTGTAAGAGTGCACAATCATATGTCAGAGTTACAAGATGAACTGAAGAGATCACAAGTCCGACTTCAAAGGTTTGGAGATCAGCTTTTCTCAGACATTTCTAGAATTGGTGCCAATGAAGAAGATTTAAGCATTGATATTTTAAGCAATGGTGAAAATACTGGTCTTCATCCAATCGCTAAACATAATGTGGAGCAGAATGATGCATCTTTCCACAGAAGAAGGCTGCATATTGAATGTGATGCTTTGGAAGAGTTGAAACAAGATAGATCAAAAGATGGGCATTTGGTTGAGACAGCTAGAACTAGGAAGCGTTCTCGCTGGAATTTATCTGATCAATTGAATGAGGACTCTCTTGGTACTCCAGACAATGGAACTGAAGTTACTAGATCTCTAGATCTTGAAGGCAAGCACAAGAAAGGATTGAAGCAACCCAGGATTGAAGCGCCATCAACCAGCATGGCAGCTCATGTGGTTGATGAGGACGTTGATATTGAACGTTATGATGGAAATGATATCTATGAAACTGCAAATACGGAAAATTATAATGGAGCGGCATATAAGGTGAAGGGTGCGCCACTTATGCTTCCCCCAGCTTTGCTACCTCGTAGCAATTATTCGCAGTATGAGGGTAACGACGAGAATGTTGATGTGGATGGTTGA 1254 0.4147 MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSAELRRFSASYSGRRDYLDNDLRDKLDRRHVSPRRYSPTPDTRGRQIIREYSPTRSLEKKSDRRYRRKQDITGQSDVSGNLKVSDRVQDRVKEGKLLSSGSRNNLEEKLKKVDSDISTLQNRKFQLEVFLDENVQEVDSLNSRIRELEGQLSKEDEECKRITSRVRKFVRVHNHMSELQDELKRSQVRLQRFGDQLFSDISRIGANEEDLSIDILSNGENTGLHPIAKHNVEQNDASFHRRRLHIECDALEELKQDRSKDGHLVETARTRKRSRWNLSDQLNEDSLGTPDNGTEVTRSLDLEGKHKKGLKQPRIEAPSTSMAAHVVDEDVDIERYDGNDIYETANTENYNGAAYKVKGAPLMLPPALLPRSNYSQYEGNDENVDVDG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2519 417 Coils Coil 160 194 - -
Gso6g2519 417 Gene3D - 1 36 - -
Gso6g2519 417 MobiDBLite consensus disorder prediction 84 115 - -
Gso6g2519 417 MobiDBLite consensus disorder prediction 84 101 - -
Gso6g2519 417 Coils Coil 132 152 - -
Gso6g2519 417 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Gso6g2519 417 Coils Coil 205 225 - -
Gso6g2519 417 MobiDBLite consensus disorder prediction 398 417 - -
Gso6g2519 417 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 416 IPR045868 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2519 Gso-Chr6 46941479 46950285 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso6g2519 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2519 - - gmx:100793596 809.675