Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2507 ATGGTTATGGGGAGAAGAACACTGTTGCTCTTGGTTTTGTGCTTGTGCTTGTGGATTCCCTTTGAAGTGGTGGGGAGAAAAGAACCTTTTTTTTCACCTACCAGTGTGAATTCCACTGTTTCTTCTAGACCCAAGGTTGTGAAGTTTGGTGCCCTCTTTACTATGGATTCTGTCATTGGAAGATCAGCTTTACCTGCAATTATGGCTGCTGTTAAGGATGTTAATTCCAGCACCAGCATTCTCCCTGGCATTGATCTGCAAGTAATTTTACGTGATACAAATTGCAGTGCTTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAATAGCTCATGTCATATCTCATGTTGTTAATGAACTCCATGTTCCTCTTTTATCATTTGGGGCAACTGATCCCACTCTATCTTCTCTACAATATCCGTATTTCGTCCGCACCACTCAGAACGACTATTTTCAGATGTATGCAATTGCAGACTTTGTTGATTATTACAGATGGAAGAAGGTAATTGCCATTTACATAGATGATGACAATGGAAGGAATGGAGTTTCTGTTTTGGGGGATGCAATGTCAAGGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGGTGCCACAGAAAGTGATATCAGTGACTTGTTAAATGAGGTGAACTTAATGGAATCGCGTGTCTATGTTCTACATGTAAATCCTGATCATGGTTTAGCAATTTTCTCTATTGCCAAGAGGCTAAGAATGATGGACAGTGGATATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTTTGATCTACCAGACACTGACACAATGGATCTCTTGCAAGGTGTTGTTGCATTTCATCATCACATTCCGGATACTGATCTCAAGAAGAGTTTTCTCTCCAGGTTGAAAAGCCAAAGAGACAATGAGACTGTGAGCTTCAATTCTTATGCACTTTATGCATATGATTCTGTTTGGTTAGCAGCTCGCGCCCTCGATGCTTATCTCAATGAAGGTGGAAATATATCTTTCTCCAGCGACCCTAAGTTGCGTGACACAAATGGAAGCATGCTGCAGTTAGCATCGCTTCGTACCTTTGATGGCGGCCCTCAGTTTCTCAAGACAATTTTGGGAATGAACTTCACTGGTCTGAGTGGTCAAGTTGAGTTTGACATGGAAAAGAATTTAGTCCGTCCAGCCTATGATATTCTAAATATTGGTGGCAGCGGATCCCATAGAATTGGTTATTGGTCTAATCACTCTGGTCTATCAGTTATAGCTCCTGAAGTTTTATATGAGAAAAAACCATCCAAGACTTCTTTAAAGAGCAATCAACAACTCTACAGTGTGATATGGCCTGGAGAGGCTACAACTACACCAAGGGGATGGGTTTTTCCCAACAATGGACAGCCACTGAGGATAGCAGTGCCGAACCGAGTGAGCTTCAAGGATTTTGTTGCTAAAAGCAAGAACCCCCAAGGGGTACAAGGCTATTGCATTGATGTCTTTGAAGCAGCCTTAAACTTGTTGACTTATCCTGTCCCGCGACAATATATGTTGTTTGGAAATGGTGAAAGGAATCCTAGCTACAACGAGCTTGTGCAGCAAGTTGCACAGAATAACTTTGATGCAGTTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTGTGGAGGAGGAGAAGTCAAGCCCTTGGTCTTTCCTTGTGCCGTTCACTACTCAAATGTGGTTGGTCACTGGTGCTTTCTTTCTCTTCGTTGGGACTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCTGAGTTCCGTGGTTCTCCGAGGAAACAACTCATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGGGAGAATACTGTAAGTGGACTCGGGCGATTGGTGCTAATAATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGCAACTGTCATCACAAATTGCAGGAATTGACAGCTTGATCTCGAGTACTCAACCGATTGGAATTCAAGATGGGTCATTCGCGCGCAAGTATCTGATAGATGACCTCAACATAGCTGAATCTAGGATAGTTACATTGAAAAACATGGAGGATTATATTGATGCCCTTCGGCGTGGCCCTAAAGCTGGAGGGGTTGCAGCAGTTGTTGATGAGCTTCCTTATGTTGAGGTTTTGATGTCTAGCATTGACTGTAAGTTCACAATTGTTGGGCAGGAGTTCACAAAAAGTGGCTGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCCATTGACTTGTCTACTGCCATCCTTCAACTCTCTGAGAGTGGGGACCTGCAAAAGATTCATGACAAATGGCTTAATAAAAAGGAGTGTTCAACCGTTGATACTGATTCAAACAAACTAGCTTTGACAAGCTTCTGGGGCCTCTTTCTGATATGTGGCATTGCATGTGTCATTGCCCTGACCATTTTCTTTGCTAGAATCTTCTGTCAATACAACAAATTCAGCCCAGAGCCTGATAAGATCGACGACAAGGAAATGCAACCGGTCAGGCCTAGACGTCCAAGTCGAACTCGTAGCATCAAGAAGTTGATGGTATTTGTAGATAGAAGAGAAGCAGATATCAAAGAGATACTTAGGGAAAACAAAAAAAGGAGACTCAGCATTGGATAA 2790 0.4283 MVMGRRTLLLLVLCLCLWIPFEVVGRKEPFFSPTSVNSTVSSRPKVVKFGALFTMDSVIGRSALPAIMAAVKDVNSSTSILPGIDLQVILRDTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHVISHVVNELHVPLLSFGATDPTLSSLQYPYFVRTTQNDYFQMYAIADFVDYYRWKKVIAIYIDDDNGRNGVSVLGDAMSRKRAKISYKAAFPPGATESDISDLLNEVNLMESRVYVLHVNPDHGLAIFSIAKRLRMMDSGYVWIATDWLPSVLDSFDLPDTDTMDLLQGVVAFHHHIPDTDLKKSFLSRLKSQRDNETVSFNSYALYAYDSVWLAARALDAYLNEGGNISFSSDPKLRDTNGSMLQLASLRTFDGGPQFLKTILGMNFTGLSGQVEFDMEKNLVRPAYDILNIGGSGSHRIGYWSNHSGLSVIAPEVLYEKKPSKTSLKSNQQLYSVIWPGEATTTPRGWVFPNNGQPLRIAVPNRVSFKDFVAKSKNPQGVQGYCIDVFEAALNLLTYPVPRQYMLFGNGERNPSYNELVQQVAQNNFDAVVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPVEEEKSSPWSFLVPFTTQMWLVTGAFFLFVGTVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIAGIDSLISSTQPIGIQDGSFARKYLIDDLNIAESRIVTLKNMEDYIDALRRGPKAGGVAAVVDELPYVEVLMSSIDCKFTIVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSESGDLQKIHDKWLNKKECSTVDTDSNKLALTSFWGLFLICGIACVIALTIFFARIFCQYNKFSPEPDKIDDKEMQPVRPRRPSRTRSIKKLMVFVDRREADIKEILRENKKRRLSIG* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2507 929 Gene3D - 66 410 - -
Gso6g2507 929 Gene3D - 479 593 - -
Gso6g2507 929 Pfam Ligand-gated ion channel 827 856 IPR001320 GO:0015276|GO:0016020
Gso6g2507 929 Pfam Bacterial extracellular solute-binding proteins, family 3 539 826 IPR001638 -
Gso6g2507 929 SUPERFAMILY Periplasmic binding protein-like II 459 827 - -
Gso6g2507 929 Gene3D - 717 829 - -
Gso6g2507 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 917 - -
Gso6g2507 929 Gene3D - 162 435 - -
Gso6g2507 929 SUPERFAMILY Periplasmic binding protein-like I 42 476 IPR028082 -
Gso6g2507 929 CDD PBP1_GABAb_receptor_plant 48 437 IPR044440 -
Gso6g2507 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 60 76 - -
Gso6g2507 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 120 148 - -
Gso6g2507 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 333 345 - -
Gso6g2507 929 Pfam Receptor family ligand binding region 64 419 IPR001828 -
Gso6g2507 929 PIRSF IGluLR_plant 3 928 IPR017103 -
Gso6g2507 929 SMART GluR_14 485 827 IPR001320 GO:0015276|GO:0016020
Gso6g2507 929 CDD GluR_Plant 482 825 - -
Gso6g2507 929 Gene3D - 594 715 - -
Gso6g2507 929 PANTHER GLUTAMATE RECEPTOR 3.4 36 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2507 Gso-Chr6 46795030 46801322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2507 43 792 Ion Channels AT1G05200 67.067 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2507 K05387 - gmx:100792741 1820.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0817 12 8678900 8685041 Gso6g2507 6 46795030 46801322 GST
Gso12g1640 12 39990305 39996465 Gso6g2507 6 46795030 46801322 PCT
Gso11g3227 11 48014870 48020870 Gso6g2507 6 46795030 46801322 PCT
Gso6g2507 6 46795030 46801322 Gso12g1639 12 39977902 39983836 PCT
Gso6g2507 6 46795030 46801322 Gso11g3228 11 48025864 48031659 PCT