Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2495 ATGCAAGCCGTTATTATGATGAATCCGGCGAGAAACATGCCTTCGATGATAGCAAGGAACAACAACAACGTTGGAGGGTTTTTTGGATCATCTTCATCACCTTTCACTCTTGCCCAGCCGAACCTGATGGACGCGTTGGAGATGGGTCAGAACACTCCCGAGAGTGAGATTCCTCGAATCCGTGAGGATGAGTTCGACAGTGCCACCAAGTCCGGTAGTGAAAACCATGAAGGTGCCTCCGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAACGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTTTTCAAGGAGTGTCCGCACCCAGATGATAAGCAAAGGAAGGAACTGAGCAGGGAATTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAACACGAGCGGCACGAGAATACAAATCTTAGAACCGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTATAGGGAGGCACTTAGCAATGCTTCGTGTCCCAATTGTGGTGGACCAACTGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGACTTGAAAACGCAAGGCTAAGAGAAGAGATTGATCGGATTTCAGCAATTGCTGCAAAGTATGTAGGGAAGCCTGTGGTGAATTATTCAAATATTTCTCCTTCTCTCCCTCCTCGTCCATTAGAAATTGGTGTTGGTGGTGCTGGTTTTGGAGGCCAACCAGGGATTGGTGTGGACATGTATGGAGCTGGGGATCTTCTTAGGTCAATCAGTGGACCCACTGAAGCTGATAAGCCAATAATCATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTTATTGGAATGGCACAAATGGGTGAGCCTCTTTGGTTAACTACACTTGATGGCACATCCACTATGCTCAATGAGGATGAGTACATTAGGTCTTTTCCTCGAGGTATTGGTCCAAAACCTAGTGGCTTCAAATGTGAAGCTTCAAGAGAAACTGCTGTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTAGAAGTGTTATCAACAGGGGTTGCCGGGAACTACAATGGTGCCTTACAAGTGATGACAGCAGAACTACAACTACCTACACCACTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGGAGATGGGACTTGGGCTGTTGTGGATGTTTCTTTGGATAATTTGCGCCCAAGTCCTTCAGCCAGATGTAGAAGAAGGCCTTCTGGCTGCCTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTCACATGGGTTGAGCATGTGGAAGTGGATGATAGAGGTGTTCACAATCTTTACAAGCAGCTTGTTAGCTCCGGACATGCATTTGGTGCAAAACGTTTGGTGGCAACCTTAGATCGACAATGTGAAAGACTCGCTAGTGCCATGGCAACAAACATTCCCACTGTAGATGTTGGTGTGATAACAAACCAAGAAGGGAGAAAAAGCATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTCTCAGGGACAGGTGCTGATGATGTAAGGGTTATGACTCGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATTGTTCTCAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCTCCTAAACGAGTCTTTGACTTCCTCCGTGACGAAAACTCTAGGAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAACGGAAGAGACACTGGAAACTGTGTATCTCTACTACGAGTAAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCGATTCAACAGGCTCTTTTGTAATTTATGCTCCAGTGGACATTGTTGCGATGAATGTGGTTCTAAACGGTGGAGACCCAGATTATGTGGCACTTCTTCCTTCAGGGTTTGCTATTCTCCCAGATGGAACCACATCGCATGGAAGTGGTGGTGGCGTCATTGGCGAAACTAGCCCTAGTAGTGGATCTCTCTTAACTGTTGCCTTTCAAATATTGGTCGATTCTGTTCCAACCGCTAAGCTTTCTCTTGGATCTGTGGCCACTGTCAACAATCTCATTGCATGCACTGTTGAGAGAATCAAGGCTTCTTTGTCTGGTGAACCTGCTTGA 2298 0.4587 MQAVIMMNPARNMPSMIARNNNNVGGFFGSSSSPFTLAQPNLMDALEMGQNTPESEIPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTNLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLEIGVGGAGFGGQPGIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTSTMLNEDEYIRSFPRGIGPKPSGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRLVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGSGGGVIGETSPSSGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEPA* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2495 765 SUPERFAMILY Homeodomain-like 80 148 IPR009057 -
Gso6g2495 765 MobiDBLite consensus disorder prediction 65 89 - -
Gso6g2495 765 CDD homeodomain 91 149 IPR001356 GO:0003677
Gso6g2495 765 MobiDBLite consensus disorder prediction 65 99 - -
Gso6g2495 765 Gene3D - 329 502 IPR023393 -
Gso6g2495 765 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Gso6g2495 765 SMART START_1 282 502 IPR002913 GO:0008289
Gso6g2495 765 ProSiteProfiles START domain profile. 273 505 IPR002913 GO:0008289
Gso6g2495 765 Coils Coil 142 174 - -
Gso6g2495 765 Pfam START domain 283 502 IPR002913 GO:0008289
Gso6g2495 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 45 762 IPR042160 -
Gso6g2495 765 SUPERFAMILY Bet v1-like 273 504 - -
Gso6g2495 765 SMART HOX_1 89 152 IPR001356 GO:0003677
Gso6g2495 765 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Gso6g2495 765 CDD START_ArGLABRA2_like 277 501 - -
Gso6g2495 765 Gene3D - 77 165 - -
Gso6g2495 765 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 45 762 - -
Gso6g2495 765 SUPERFAMILY Bet v1-like 521 757 - -
Gso6g2495 765 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2495 Gso-Chr6 46724713 46733005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2495 60 765 Homeobox Transcription Factor Family AT1G05230 80.337 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso6g2495 START 4e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2495 K09338 - gmx:100790101 1498.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0822 12 8727081 8734901 Gso6g2495 6 46724713 46733005 GST
Gso12g1642 12 40003738 40010981 Gso6g2495 6 46724713 46733005 PCT
Gso11g3225 11 48001690 48008845 Gso6g2495 6 46724713 46733005 PCT
Gso6g2495 6 46724713 46733005 Gso12g1642 12 40003738 40010981 PCT
Gso6g2495 6 46724713 46733005 Gso11g3225 11 48001690 48008845 PCT