Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2490 ATGGCTGACATAGATCGCTCCTTTGATAATAATGTTTCTGCTGTTTCTACTGAGAAATCAAGCCAAGTTTCAGATGTTGAATTTTCTGAAGCTGAGGAAATCCTTATTGCCATGGTGTATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACTGCAGAAGAGATAGAGAAATATTGGACTTCAAGATTTTCGACTAGCCAATGA 225 0.3956 MADIDRSFDNNVSAVSTEKSSQVSDVEFSEAEEILIAMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRFSTSQ* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2490 74 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g2490 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 11 73 - -
Gso6g2490 74 MobiDBLite consensus disorder prediction 9 24 - -
Gso6g2490 74 CDD SANT 27 66 IPR001005 -
Gso6g2490 74 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 11 73 - -
Gso6g2490 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 74 IPR017930 -
Gso6g2490 74 Pfam Myb-like DNA-binding domain 27 67 IPR001005 -
Gso6g2490 74 Gene3D - 27 70 - -
Gso6g2490 74 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Gso6g2490 74 SUPERFAMILY Homeodomain-like 27 70 IPR009057 -
Gso6g2490 74 SMART sant 24 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2490 Gso-Chr6 46663665 46665210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2490 20 71 MYB Transcription Factor Family AT5G14750 46.154 6.06e-13 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso6g2490 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2490 - - gmx:778179 146.747