Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2488 ATGGAGAGCCAGAGTTACTTCAAGGCTTTGATTATTATTCTTATAGCACTAATTGGATCAACTCAAGCTCAGTTGCAGCTTGGTTTCTATGCCAAAAGCTGTCCAAAGGCTGAGAAAATAATTTTGAAGTATGTTGTTGAGCATATCCGAAATGCTCCATCACTAGCAGCTGCTCTCATAAGAATGCACTTCCACGATTGTTTTGTCAATGGTTGTGATGGATCAGTGCTTGTGAACTCAACACAAGGCAATCAAGCTGAAAAGGATTCTCCTCCAAATCTTACTCTTCGAGGCTTTGGCTTCATTGACACAATAAAGAGTGTTGTTGAAGCTGAATGCCCTGGTGTAGTCTCTTGCGCTGATATCCTGGCTTTGACTGCCAGAGACTCTGTTCATTCCATTGGTGGACCCTATTGGAATGTTCCAACAGGTCGAAGGGACGGGGTAATCTCTAAAGCAGAAGAGGCATTGCTTAGCTTGCCTGCTCCATTTCACAACCTCACTACCCTCCTAACACTCTTTGGCAATGTTGGACTTGATGTAAACGACCTTGTCTTGCTTTCTGGTGCTCAAACGATTGGTGTTTCTCATTGCTCATCAATTGCAACCCGATTATACAATTTTACTGGCAAGGGTGACACTGATCCAACTCTAGATAATGAATATGCAAAAAATCTTAAGACCTTTAAGTGCAAGAATATCAATGACAACACCACACTTATTGAGATGGACCCGGGAAGTCGGAACACATTTGATCTTGGTTATTTTAAACAAGTGGTTAAAAGAAGGGGTTTGTTTCAATCAGATGCTGCATTGCTTGAAAGTTCTACCACAAGAGCTATTATTGCCAGACAACTTCAATCAACTCAAGGATTTTTTGCAGAATTTGCCAAGTCCATGGAAAAAATGGGACGAATTAATGTCAAGACCGGAACAGAAGGAGAAATAAGGAAACAATGTGCACGAGTAAATAGCTAA 978 0.411 MESQSYFKALIIILIALIGSTQAQLQLGFYAKSCPKAEKIILKYVVEHIRNAPSLAAALIRMHFHDCFVNGCDGSVLVNSTQGNQAEKDSPPNLTLRGFGFIDTIKSVVEAECPGVVSCADILALTARDSVHSIGGPYWNVPTGRRDGVISKAEEALLSLPAPFHNLTTLLTLFGNVGLDVNDLVLLSGAQTIGVSHCSSIATRLYNFTGKGDTDPTLDNEYAKNLKTFKCKNINDNTTLIEMDPGSRNTFDLGYFKQVVKRRGLFQSDAALLESSTTRAIIARQLQSTQGFFAEFAKSMEKMGRINVKTGTEGEIRKQCARVNS* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2488 325 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601|GO:0042744
Gso6g2488 325 Gene3D - 28 324 - -
Gso6g2488 325 Gene3D Peroxidase, domain 2 161 303 - -
Gso6g2488 325 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 PANTHER PEROXIDASE 3 324 - -
Gso6g2488 325 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Gso6g2488 325 PANTHER PEROXIDASE 25-RELATED 3 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 Pfam Peroxidase 47 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso6g2488 325 SUPERFAMILY Heme-dependent peroxidases 24 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2488 Gso-Chr6 46641863 46644522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2488 14 325 Peroxidase AT1G05260 67.093 6.70e-159 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2488 K00430 - gmx:100785662 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0831 12 8952776 8955287 Gso6g2488 6 46641863 46644522 GST
Gso12g1650 12 40108890 40111145 Gso6g2488 6 46641863 46644522 PCT
Gso11g3216 11 47917669 47919567 Gso6g2488 6 46641863 46644522 PCT
Gso6g2488 6 46641863 46644522 Gso12g1650 12 40108890 40111145 PCT
Gso6g2488 6 46641863 46644522 Gso11g3216 11 47917669 47919567 PCT