Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2479 ATGGAATTGATAAGACTCAGTTATGCGGTTGTTTATGTCATTCTCCTTTGTGCGTTGGCCCAAGGGGGCTCAGAAGGGAAGGGGGGGAAGGAAGAGGAGATTTCTAGAGATGGTGGAGAAGCTTTCTCATCTTCCATTAATTATGTGCATGGAATTAATAAGGTAGAAAATGAATTGAAACATTGCAGGAAAGAATTGATAGAGAGGAACAATGATGTCAAAACTAGTATTTCTCCTCCTGCTCCTGTTTCAGAAAAGGGTAGCTCTAGATATTTATTGCCAAAGCATTCTAGATCAACCTTGGGTGTGGAAAGTGCTCATGGCAGAAATTTGATTGCTGATTCACCACATAATGCACCAAGTCCTTCTGCTACTACTGCTGAACCACCAAGTCATGGTCCAACACCAACAAGTTCTCCATCATCACCAACTCCATCATCACCAACTCCATCATCACCGTCTCAATCATCACCAACTCCAAGTCCAAAAGGTGTGGATTTACCACTCCCTCCAGATATGTTTGTGCCACTTCCACCATCACCCCGTGCACCTCATCCTCCTCCTCAGAATTTTCGACCTATAGTAGATGCTCCTGTTGCTTCATCACCTAACAATGAAAACAAAAAGAAGCAAACAATTATTTTAGCTGCCTCTTTATCAGGAATTATTATCTTGATAGGCTTGGCCCTCTGCTATCGCGAGGCCAGAGGCAACAAAGGTGACAGAGATGACAGGCCCTTGTTGGTATTAACCTCAAGTGACTATTCTGGTGGTTCAAAGAAGGTTGTTCGATTGGGAGATGCTGACAAGGAAGAATCTGACATTGACAATGGAAAGAAACCTTCTAATTTTAGAAATTGGTCCATTAAGGGTGGACATAACAATGCCTCATTGGTTGAGACAACAGCATCAGAAGGTGTAGGACAAGTTCTCAAAGGAAAGCCTGCCCCTCCACCTCCACCTCTACCTCTTGGACCACCACCACCATCAGCTCCAAAGCCGCCACCGCCTCCTGCTCCTCGTGCACCGCCACCTCCAAAAGGTGCTCATCCTCCACCTGCTCCTCCCAAACCATTGGGAGGTAAAAATCAAGGTCCATTACTTGCTAAAGAAGGAACTTCAAGTGACGGTGATGCTCCAAAACCAAAACTAAAGCCATTTTTCTGGGATAAGGTTAATGCAAAACCTGACCAATCAATGGTGTGGCATGAGATCAGTGCAGGATCATTTGTGATCAATGAGGAAATGATGGAGTCTTTGTTTGGCTGCACCAACCAGAATAAAAATGAACCTAAAAAAAATTCACTACATGTAGATACTTCAGTGCAATATATTCAGATTATTGACCCAAAGAAAGCGCAGAACTTATCAATTCTTTTGCGAGCTCTGAATGTGACAACAGAAGAAGTTATTGATGCTCTTAAAGAAGGTAATGAGATTCCTGTGGAGCTCATCCAAACATTGTTGAAGATGGCACCTACAACAGATGAGGAACTGAAGCTAAGGCTATTCAATGGACAACTCTCAGAACTAGGCCCGGCAGAGAGGTTTCTCAAAGTGTTGGTTGACATTCCATTCGCTTTCAAACGTCTTGAATCTCTCAAGTTCATGTTTATGCTTAAAGAAGACTTCTCAAGCATTAAGGACTCCTTTGCCACATTAGAGGTTGCATGCGACGAACTCAGAAAAAGCAGGCTATTCCTGAAACTCCTCGAAGCAGTTCTCAAAACCGGCAACCGCATGAACGACGGAACCTACCGCGGAGGCGCGCAGGCGTTCAGGCTCGACACCCTCCTCAAACTCTCCGACGTAAAAGGAACAGACAGCAAGACAACACTCTTGCACTTCGTGGTTCAAGAAATCATCCGCTCCGAGGGAATAAGAGCGGCGCGAACAGAAAGAGCAGGAAGAAGCATCTCCAGCGTCGGAACCAACAATGATTCCGACGAAGGAGGAGCCGAGGAGTCCGAGGAGCACTACCGCAGCCTCGGACTCCAGGTAATCTCCGGGCTCAGCAATGAGCTCGGAGACGTGAAGAAGGCCGCGCTTATAGACGGTGATGCACTCAGCAGCACCGTCTTAAAGCTCGGCCACTCAATGGTGAAGACTCAAGAATTCTTGGACAATGACATGAAGAACATTGAGGAAGAGAGCGAGTTCCAGCATTGCATGGAGAGCTTCATGGAGAAAGCGAGGGAGGAAGTGACGTGGCTGGTGAATGAAGAGAAGAGGATAATGGCTTTGGTTAAGAGCACTGCGGACTACTTTCACGGGAATGCCGGGAAGGACGAAGGCTTGCGTTTGTTCTTGATCGTGCGTGATTTCTTGATCATATTGGACAAGGTTTGCAGCGAGGTGAGGGAATCTACCATGAAGATAGCCAAAGCTGCAAGCAATAGCGCCAAAGAGGCAGCGAGGAGTTCGGTTTCTTCGTCGCAAAACTCGCCAACTCCATCGACGTCCGATATGCATAGAAGGCTGTTTCCGGCGATCGCCGAGAGGAGAATGGATTACTCCAGTTCTGATGAGGATGAGGACTTCTAA 2544 0.4638 MELIRLSYAVVYVILLCALAQGGSEGKGGKEEEISRDGGEAFSSSINYVHGINKVENELKHCRKELIERNNDVKTSISPPAPVSEKGSSRYLLPKHSRSTLGVESAHGRNLIADSPHNAPSPSATTAEPPSHGPTPTSSPSSPTPSSPTPSSPSQSSPTPSPKGVDLPLPPDMFVPLPPSPRAPHPPPQNFRPIVDAPVASSPNNENKKKQTIILAASLSGIIILIGLALCYREARGNKGDRDDRPLLVLTSSDYSGGSKKVVRLGDADKEESDIDNGKKPSNFRNWSIKGGHNNASLVETTASEGVGQVLKGKPAPPPPPLPLGPPPPSAPKPPPPPAPRAPPPPKGAHPPPAPPKPLGGKNQGPLLAKEGTSSDGDAPKPKLKPFFWDKVNAKPDQSMVWHEISAGSFVINEEMMESLFGCTNQNKNEPKKNSLHVDTSVQYIQIIDPKKAQNLSILLRALNVTTEEVIDALKEGNEIPVELIQTLLKMAPTTDEELKLRLFNGQLSELGPAERFLKVLVDIPFAFKRLESLKFMFMLKEDFSSIKDSFATLEVACDELRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDSKTTLLHFVVQEIIRSEGIRAARTERAGRSISSVGTNNDSDEGGAEESEEHYRSLGLQVISGLSNELGDVKKAALIDGDALSSTVLKLGHSMVKTQEFLDNDMKNIEEESEFQHCMESFMEKAREEVTWLVNEEKRIMALVKSTADYFHGNAGKDEGLRLFLIVRDFLIILDKVCSEVRESTMKIAKAASNSAKEAARSSVSSSQNSPTPSTSDMHRRLFPAIAERRMDYSSSDEDEDF* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2479 847 Gene3D Formin, FH2 domain 380 815 IPR042201 -
Gso6g2479 847 Coils Coil 52 72 - -
Gso6g2479 847 MobiDBLite consensus disorder prediction 111 206 - -
Gso6g2479 847 SMART it6_source 374 794 IPR015425 -
Gso6g2479 847 MobiDBLite consensus disorder prediction 634 656 - -
Gso6g2479 847 MobiDBLite consensus disorder prediction 263 279 - -
Gso6g2479 847 MobiDBLite consensus disorder prediction 253 290 - -
Gso6g2479 847 MobiDBLite consensus disorder prediction 127 193 - -
Gso6g2479 847 MobiDBLite consensus disorder prediction 798 826 - -
Gso6g2479 847 MobiDBLite consensus disorder prediction 313 360 - -
Gso6g2479 847 Pfam Formin Homology 2 Domain 378 779 IPR015425 -
Gso6g2479 847 PANTHER FORMIN-LIKE PROTEIN 1 845 - -
Gso6g2479 847 MobiDBLite consensus disorder prediction 798 822 - -
Gso6g2479 847 PRINTS Proline rich extensin signature 114 126 - -
Gso6g2479 847 PRINTS Proline rich extensin signature 129 145 - -
Gso6g2479 847 PRINTS Proline rich extensin signature 153 165 - -
Gso6g2479 847 PRINTS Proline rich extensin signature 177 198 - -
Gso6g2479 847 PRINTS Proline rich extensin signature 316 341 - -
Gso6g2479 847 SUPERFAMILY Formin homology 2 domain (FH2 domain) 443 796 - -
Gso6g2479 847 MobiDBLite consensus disorder prediction 309 382 - -
Gso6g2479 847 PANTHER FORMIN-RELATED 1 845 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gso6g2479 847 ProSiteProfiles Formin homology-2 (FH2) domain profile. 374 805 IPR015425 -
Gso6g2479 847 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2479 Gso-Chr6 46511551 46517399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2479 376 809 FH2 protein (formin) Gene Family AT5G67470 46.727 2.69e-120 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2479 - - gmx:100780844 927.161