Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2476 ATGCACATGTTAGTGAAAAACCACAATAAGGGGGATGGATCTAAGTCCCTCGCCGATACACTGGCGAAATGGAAAGAATATAATGCTTGGCTGGAGTCTAACAATGAAGCTGAGAAGCCGGCTAGGAAGGTCCCTGCCAAGGGATCAAAGAAAGGGTGTATGAAAGGAAAAGGAGGGCCCGAGAACTCACGCTGTAACTACAGAGGAGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATCCGAGAGCCAAACAGAGGAAGTAGGCTCTGGTTGGGTACTTTTCCCACTGCCATTAGCGCTGCTCTCGCTTATGATGAAGCAGCAAGGGCAATGTATGGTTCCTGTGCGCGCCTCAACTTTCCCAACGTTCAAGTTTCAACTTTGTCTGAGGAATCGTCGAGAAATTCTCCAGCTGCTGCTAACCGGTCGAGAAATTCTCCAGCTGCTAGTCAATCCGGTCATGCGTTGATGATATTAGAGAGTTCTGAGTGCATGATATTGCCGAACAACTCTGGTGGAGACGCAGCAGAGGATGATGACATGGAAGACCTTTCCTTATCCTTAAGTGTGAAACGTGTGAAGCACGAGGAAGGGGAGGATGAATCAGGGACCAGTTCTTCCTATCTTTCATTGTCTTGA 645 0.4806 MHMLVKNHNKGDGSKSLADTLAKWKEYNAWLESNNEAEKPARKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAISAALAYDEAARAMYGSCARLNFPNVQVSTLSEESSRNSPAAANRSRNSPAASQSGHALMILESSECMILPNNSGGDAAEDDDMEDLSLSLSVKRVKHEEGEDESGTSSSYLSLS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2476 214 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Gso6g2476 214 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gso6g2476 214 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Gso6g2476 214 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Gso6g2476 214 MobiDBLite consensus disorder prediction 131 154 - -
Gso6g2476 214 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Gso6g2476 214 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Gso6g2476 214 MobiDBLite consensus disorder prediction 36 65 - -
Gso6g2476 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 211 - -
Gso6g2476 214 MobiDBLite consensus disorder prediction 192 214 - -
Gso6g2476 214 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Gso6g2476 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 211 - -
Gso6g2476 214 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2476 Gso-Chr6 46482679 46484832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2476 4 123 AP2-EREBP Transcription Factor Family AT2G40350 58.871 3.01e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g2476 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2476 - - gmx:100783729 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0844 12 9201590 9203442 Gso6g2476 6 46482679 46484832 GST
Gso12g1668 12 40276622 40278450 Gso6g2476 6 46482679 46484832 PCT
Gso11g3194 11 47744766 47746564 Gso6g2476 6 46482679 46484832 PCT
Gso6g2476 6 46482679 46484832 Gso12g1668 12 40276622 40278450 PCT
Gso6g2476 6 46482679 46484832 Gso11g3194 11 47744766 47746564 PCT