Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2473 ATGAACAAGTGCGAACTGTGCAAAGTTCCGGCGAGGATCTTCTGCGAGTCGGACCAGGCGAGCTTATGCTGGGACTGCGACGCTAAGGTTCACAGCGCCAACTTCTTGGTCGCGAGACACGCGCGAACCTTACTCTGCCGCACGTGCCGCTCTCCCACGCCGTGGAAGGCCTCCGGCGCCTCACTCGCCAGCGCCGTCTCCGTCTGCGACCGCTGCGCCGCCTCCGAAGAACCGGAAGAGAGTGAAGCCGGCAATGACGACGAACCAGACACCGAGGACGACGACAACGACGACGAGGACGGCGACAATCAGGTCGTGCCGTGGTCCTCCTCCCCGCCGCCGCCTCCGCCGTCGAGCTCCTCCGGCAGCGAATGGTCGGAGTGCAAAAACGACGACGCTTCTATTTCCGCCTCGGAACAGGAAACGACAACATGCTCGTTGAAACGACAGCGCGAGGACGATGATGATGCTTCTTCCGATCGTGATCCCAGGGTGTTGAGAAGGGTTGGGCGTCTCAACGGAGGTTGCGTGTGA 534 0.6199 MNKCELCKVPARIFCESDQASLCWDCDAKVHSANFLVARHARTLLCRTCRSPTPWKASGASLASAVSVCDRCAASEEPEESEAGNDDEPDTEDDDNDDEDGDNQVVPWSSSPPPPPPSSSSGSEWSECKNDDASISASEQETTTCSLKRQREDDDDASSDRDPRVLRRVGRLNGGCV* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2473 177 MobiDBLite consensus disorder prediction 73 177 - -
Gso6g2473 177 MobiDBLite consensus disorder prediction 79 102 - -
Gso6g2473 177 Pfam B-box zinc finger 2 41 IPR000315 GO:0008270
Gso6g2473 177 MobiDBLite consensus disorder prediction 121 144 - -
Gso6g2473 177 MobiDBLite consensus disorder prediction 145 168 - -
Gso6g2473 177 PANTHER - 1 160 - -
Gso6g2473 177 CDD Bbox1_BBX-like 3 45 - -
Gso6g2473 177 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 160 - -
Gso6g2473 177 SMART bboxneu5 1 45 IPR000315 GO:0008270
Gso6g2473 177 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2473 Gso-Chr6 46427418 46428491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2473 3 115 C2C2-CO-like Transcription Factor Family AT5G54470 47.328 9.35e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso6g2473 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2473 - - gmx:100782655 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0851 12 9319001 9320164 Gso6g2473 6 46427418 46428491 GST
Gso12g1677 12 40402357 40403801 Gso6g2473 6 46427418 46428491 PCT
Gso11g3189 11 47695274 47696792 Gso6g2473 6 46427418 46428491 PCT
Gso6g2473 6 46427418 46428491 Gso12g1677 12 40402357 40403801 PCT
Gso6g2473 6 46427418 46428491 Gso11g3189 11 47695274 47696792 PCT