Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2471 ATGAGGAACAACAAGCCACAGTTATGGCTTTCTCTTTCACTCTTCATCACATGCTTCTCTTTTCGCACATCCCTTGCTGCTTTGACCACCATCTCAGCAAACCAATCTCTCTCCGGGGATGAAACTCTTGTCTCACAAGGTGGCGAATTCGAATTGGGCTTCTTCAACACAGGTAACAACTCTAACAAATTCTACATAGGCATGTGGTACAAAAAGATATCTCAAAGAACCTATGTTTGGGTAGCAAATAGAGACCAACCAGTTTCTGATAAGAATTCTGCCAAGTTAACAATATTGGATGGTGATTTGGTGCTTTTAGACCAATACCAAAATCTAGTTTGGTCAACCAATTTGAATTCTCCTAGCTCAGGTTCTGTTGTAGCTGTGCTTCTAGACAGTGGGAATCTTGTATTAAGCAATAGGGCTAATGCATCAGCATCTGATGCTATGTGGCAGAGTTTTGATCGCCCCACAGATACATGGCTTCCTGGTGGTAAGATAAAATTGGACAACAAAACAAAGAAGCCACAATATTTAACTTCATGGAAGAATAGCGAAGATCCTGCGCAGGGTTTGTTCTCTCTTGAACTAGACCCTGCAGGGAGCACTGCTTATCTGATTCTTTGGAACAAATCTGAACAGTATTGGACAAGTGGTGCTTGGAATGGACATATTTTCAGCTTGGTTCCTGAGATGAGGCTCAACTACATCTACAATTTCACCTTTCAGTCCAATGAGAACGAGAGCTACTTCACCTATTCCGTTTATAATTCTTCTATTATCACGCGTTTCGTGATGGATGGCTCGGGGCAGGTCAAGCAACTTTCGTGGCTGGAGAATGCTCAGCAATGGAATTTGTTCTGGTCTCAGCCAAGGCAACAGTGTGAGGTCTATGCCTTCTGTGGTGGATTTGGGAGCTGCACTGAGAATGCCATGCCATATTGTAATTGTTTGAATGGTTATAAGCCAAAGTCACAATCTGATTGGAATCTTAATGATTACTCAGGAGGGTGTGTGAAAAAGACCAACTTTCAATGTGAGAATCCAAATTCCTCTAACAAGGACAAGGACAGGTTCCTTCCAATTCTCAACATGAAATTGCCTAATCATTCACAATCCATAGGAGCTGGAACTTCTGGGGAATGTGAAGCAACATGCCTGAGTAACTGTTCTTGTACTGCATATGCTTATGACAATAGTGGTTGCTCAATTTGGAATGGTGATCTCTTGAATCTGCAGCAGCTTACTCAAGATGATAGTAGTGGACAGACTTTGTTCCTCAGGCTTGCAGCATCTGAGTTTCATGATTCTAAAAGCAATAAGGGGACCGTCATTGGTGCTGCTGGAGCTGCTGCTGGTGTAGTGGTTCTTCTAATAGTTTTTGTGTTTGTGATGCTGAGGCGCAGAAGGAGGCATGTTGGGACCGGAACATCAGTGGAGGGCTCATTGATGGCATTTAGCTACAAGGATTTGCAAAATGCCACAAAGAATTTCTCGGATAAACTTGGAGGAGGGGGATTTGGTTCTGTCTTCAAAGGAACATTGGCTGATTCTAGTATCATAGCAGTGAAGAAGCTTGAAAGCATTAGCCAAGGTGAGAAGCAGTTTAGAACAGAAGTGAGTACAATTGGGACAGTTCAACATGTCAACCTTGTAAGGCTTCGCGGCTTCTGTTCTGAAGGTACTAAGAAACTTCTGGTTTATGATTACATGCCAAATGGTTCCTTGGAGTCCAAAATGTTTTATGAAGATAGCTCCAAGGTGTTGGATTGGAAAGTGAGGTACCAAATTGCTCTTGGAACAGCAAGGGGGTTGAATTATCTCCATGAGAAGTGCAGAGACTGCATCATACACTGTGATGTGAAGCCAGAGAACATTCTCCTAGATGCTGATTTTGTTCCAAAGGTGGCAGATTTCGGTCTTGCAAAGCTTGTTGGAAGGGACTTTAGTAGGGTCCTCACTACCATGAGAGGGACAAGAGGCTATCTTGCTCCAGAGTGGATTTCAGGTGTGGCTATCACTGCCAAAGCTGATGTCTACAGCTATGGAATGATGCTTTTCGAGTTTGTGTCGGGTAGGAGGAACTCCGAGGCATCAGAAGATGGTCAAGTGAGGTTCTTCCCTACCTATGCTGCAAACATGGTGCACCAAGGAGGGAATGTCCTTAGCCTTTTGGACCCTAGGTTGGAAGGAAATGCTGACCTTGAAGAGGTCACTAGAGTCATCAAAGTTGCTTCATGGTGTGTCCAAGATGATGAATCTCACAGGCCTTCAATGGGTCAAGTGGTTCAAATCCTTGAAGGGTTCTTGGATTTGACTTTGCCTCCAATTCCAAGGACCCTCCAAGCCTTTGTTGACAACCATGAGAACATTGTTTTCTTCGATGACTCCAGCTCCACACAGAGTTCACAGGTTAAGAGTAATGCATCAAGTGCTTCCTCTCAAGCCAAAAGCAACATCTCATCATCCAAAAGTAGCACCTAG 2484 0.4368 MRNNKPQLWLSLSLFITCFSFRTSLAALTTISANQSLSGDETLVSQGGEFELGFFNTGNNSNKFYIGMWYKKISQRTYVWVANRDQPVSDKNSAKLTILDGDLVLLDQYQNLVWSTNLNSPSSGSVVAVLLDSGNLVLSNRANASASDAMWQSFDRPTDTWLPGGKIKLDNKTKKPQYLTSWKNSEDPAQGLFSLELDPAGSTAYLILWNKSEQYWTSGAWNGHIFSLVPEMRLNYIYNFTFQSNENESYFTYSVYNSSIITRFVMDGSGQVKQLSWLENAQQWNLFWSQPRQQCEVYAFCGGFGSCTENAMPYCNCLNGYKPKSQSDWNLNDYSGGCVKKTNFQCENPNSSNKDKDRFLPILNMKLPNHSQSIGAGTSGECEATCLSNCSCTAYAYDNSGCSIWNGDLLNLQQLTQDDSSGQTLFLRLAASEFHDSKSNKGTVIGAAGAAAGVVVLLIVFVFVMLRRRRRHVGTGTSVEGSLMAFSYKDLQNATKNFSDKLGGGGFGSVFKGTLADSSIIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKKLLVYDYMPNGSLESKMFYEDSSKVLDWKVRYQIALGTARGLNYLHEKCRDCIIHCDVKPENILLDADFVPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEASEDGQVRFFPTYAANMVHQGGNVLSLLDPRLEGNADLEEVTRVIKVASWCVQDDESHRPSMGQVVQILEGFLDLTLPPIPRTLQAFVDNHENIVFFDDSSSTQSSQVKSNASSASSQAKSNISSSKSST* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2471 827 SUPERFAMILY Protein kinase-like (PK-like) 481 803 IPR011009 -
Gso6g2471 827 Gene3D Phosphorylase Kinase; domain 1 462 570 - -
Gso6g2471 827 Pfam PAN-like domain 353 411 IPR003609 -
Gso6g2471 827 SMART serkin_6 496 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2471 827 CDD STKc_IRAK 502 769 - -
Gso6g2471 827 MobiDBLite consensus disorder prediction 797 827 - -
Gso6g2471 827 Gene3D - 24 154 IPR036426 -
Gso6g2471 827 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Gso6g2471 827 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Gso6g2471 827 PIRSF SRK 3 822 IPR024171 GO:0004674
Gso6g2471 827 CDD PAN_AP_plant 351 430 - -
Gso6g2471 827 ProSiteProfiles PAN/Apple domain profile. 346 430 IPR003609 -
Gso6g2471 827 SMART blect_4 34 157 IPR001480 -
Gso6g2471 827 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 7 794 - -
Gso6g2471 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Gso6g2471 827 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 794 - -
Gso6g2471 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 222 IPR036426 -
Gso6g2471 827 CDD B_lectin 34 157 IPR001480 -
Gso6g2471 827 Gene3D Transferase(Phosphotransferase) domain 1 571 773 - -
Gso6g2471 827 Pfam D-mannose binding lectin 77 183 IPR001480 -
Gso6g2471 827 Pfam Protein kinase domain 499 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2471 827 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Gso6g2471 827 SMART ntp_6 354 429 IPR003609 -
Gso6g2471 827 ProSiteProfiles Protein kinase domain profile. 496 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2471 Gso-Chr6 46407918 46410930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2471 479 776 Receptor kinase-like Gene Family AT5G20050 43.949 2.31e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso6g2471 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2471 - - gmx:100782119 1561.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0854 12 9376474 9379485 Gso6g2471 6 46407918 46410930 GST
Gso12g1679 12 40428528 40431613 Gso6g2471 6 46407918 46410930 PCT
Gso6g2471 6 46407918 46410930 Gso12g1679 12 40428528 40431613 PCT