Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2469 ATGGTGAAAACCCCTTACTGTGACAAAAAAAGTGGACTGAAAAAAGGAACATGGACACCAGAAGAAGATTGGAAGTTGATTGCTCATGTTAATGCACATGGCCACAAGAATTGGCGCCAGTTACCCAAGCTTGCAGGTCTTGCGAGGTGTGGAAAGAGCTGCAGATTGAGGTGGGTGAATTATTTAAGGCCAGGCATCAAGAGAGGGAACTATACTCATGAAGAAGAAGAGACAATTATCAAACTTCGCACAAGTCTTGGAAATAGGTGGTCTGTGATTGCCTCTCACTTACCTGGAAGATCAGACAACGAGATAAAAAATCATTGGCATGCCCATCTTAAGAAGCGCTTTCAACACGACGAAGCTTCCACGCCAAAGCTGCATCTCTCCACAGTTGAATCCATTCAAGAGAATAATTACTCAGTGGAAGTTGATCCAAGCCCTTTCCAAAACAGTTCTCCAGCTACTTATGATGCTTCTCCATCGTCCCATCACACATCAATGAGCGATTTTTCCAGTATGATAACTGAACCTGCATCAGCTAGCAGTGACGGGAATTTGGTTATTGATGGCTTTGCTGATTTCACAGAGGAAAACACAGATCCTATAAGTGCATATTCTTGGGAAGAACTGTATGAAATTTCGTACTTCTCCGGCGAATTTCTGGCACCTTTTGTGACTGAACCCCAAAGTTTTTGTCCAGTTTATGATGTTTGGGGGCTGTTGTAA 729 0.4307 MVKTPYCDKKSGLKKGTWTPEEDWKLIAHVNAHGHKNWRQLPKLAGLARCGKSCRLRWVNYLRPGIKRGNYTHEEEETIIKLRTSLGNRWSVIASHLPGRSDNEIKNHWHAHLKKRFQHDEASTPKLHLSTVESIQENNYSVEVDPSPFQNSSPATYDASPSSHHTSMSDFSSMITEPASASSDGNLVIDGFADFTEENTDPISAYSWEELYEISYFSGEFLAPFVTEPQSFCPVYDVWGLL* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2469 242 Gene3D - 12 68 - -
Gso6g2469 242 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 181 - -
Gso6g2469 242 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 181 - -
Gso6g2469 242 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gso6g2469 242 SMART sant 14 64 IPR001005 -
Gso6g2469 242 SMART sant 67 115 IPR001005 -
Gso6g2469 242 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso6g2469 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gso6g2469 242 MobiDBLite consensus disorder prediction 142 170 - -
Gso6g2469 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Gso6g2469 242 Gene3D - 70 140 - -
Gso6g2469 242 CDD SANT 70 113 IPR001005 -
Gso6g2469 242 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Gso6g2469 242 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso6g2469 242 CDD SANT 17 62 IPR001005 -
Gso6g2469 242 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2469 Gso-Chr6 46381326 46383150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2469 1 177 MYB Transcription Factor Family AT2G31180 52.459 9.04e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g2469 Myb_DNA-binding 7.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2469 K09422 - gmx:106799185 505.753