Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2467 ATGGTGAGAACCCCGTCTTGTGACAAAAGTGGAATGAGGAAAGGTACTTGGACTCCAGAGGAAGATATGAAGTTAATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGATGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCAAATATCAAAAGAGGGAACTTCACTCAACAGGAAGAAGAATGCATCATCAGAATGCACAAAAAACTTGGTAACAGATGGTCTGCTATTGCGGTTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAATCATTGGCACACCGCACTCAAGAAGAGGTCTCAACAAAACACACTCATAAATGAAGAAACCAAAGCCATCAAATCAAAGAATAAAGAATCAGTTCACAACAACGGTGTATTTGTTACTCTTCCAGCAACTTCTCAGATTTCAGATAATTCATCATTATCGCCAGTTTCATCCACCTGCAGCGAGTTTTCCTCCATAACTTCTGATCTTTCCACTGCTGCCAGCTGTATGGAAAATTTGGTGTTTGAAGATGATGACTTGGGTTTTCTGGATTTATACAATATTGATCCTATGAATGGAAATTTGTGGACAGAACTAAATCTCGATGGCATTTCCTTCAATACACCATGTGAAATAGTTTCAGGAGATACTAATAGCACTTTCCAAAGCTCAAGTTCTAGCAATAGCAACACCCTTGATTCTCCGCATCAATCAACCAGCGAAAGTATTGTTGTGAATAATGACTTTGGTCGCTTTCTCGATTCATACGAAGAGGCAACAGTCGATAACTTTTGGACACAGTCATATGTAGCTGACATGTCCCACGTTCCAAGCGAACTATTTGTTCCCTCCGTGGCAGAATCTGAATATTTTACTCCATTATATGATGATCTGTGGGGTCAAACTCATTTGTACCATGAAAATCATTGCTTATTCTGA 975 0.3979 MVRTPSCDKSGMRKGTWTPEEDMKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNIKRGNFTQQEEECIIRMHKKLGNRWSAIAVELPGRTDNEIKNHWHTALKKRSQQNTLINEETKAIKSKNKESVHNNGVFVTLPATSQISDNSSLSPVSSTCSEFSSITSDLSTAASCMENLVFEDDDLGFLDLYNIDPMNGNLWTELNLDGISFNTPCEIVSGDTNSTFQSSSSSNSNTLDSPHQSTSESIVVNNDFGRFLDSYEEATVDNFWTQSYVADMSHVPSELFVPSVAESEYFTPLYDDLWGQTHLYHENHCLF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2467 324 CDD SANT 69 110 IPR001005 -
Gso6g2467 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso6g2467 324 CDD SANT 16 61 IPR001005 -
Gso6g2467 324 Gene3D - 14 66 - -
Gso6g2467 324 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 278 - -
Gso6g2467 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso6g2467 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso6g2467 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso6g2467 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso6g2467 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 278 - -
Gso6g2467 324 MobiDBLite consensus disorder prediction 229 251 - -
Gso6g2467 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso6g2467 324 Gene3D - 68 141 - -
Gso6g2467 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso6g2467 324 SMART sant 13 63 IPR001005 -
Gso6g2467 324 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2467 Gso-Chr6 46360728 46362211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2467 1 206 MYB Transcription Factor Family AT2G31180 50.000 2.39e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g2467 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2467 K09422 - gmx:100777107 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0859 12 9499839 9501361 Gso6g2467 6 46360728 46362211 GST