Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2466 ATGGTGAGAACCCCATCTTGTGACAAAAGTGGAATGAGGAAAGGTACTTGGACACTGGAGGAAGATAGGAAGTTAATTGCATATGTTACTAGGTATGGCTCCTGGAATTGGCGCCAACTTCCCAGGTTTGCAGGTCTGGCAAGATGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCTGATGTCAAAAGAGGGAACTTCACTCAACAAGAAGAAGAATTCATCATCAGAATGCACAAAAAACTTGGTAACAGATGGTCTACCATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAGAACCATTGGCACACCACACTCAAGAAGAGGTCTCAACAAAACACACTCACAAAGGAAGAAGCTAGAGCCTCCAAATCAAAGGATAAGGTACTTCCCAACAAGGGTGTTACTGTTACTCTTCCAGCTACTTCTTCCCAGTTTTCAGATAATTCATCATTATCGCCAGCTTCATCCACCAGCAGCGAGTTTTCCAACATAACTTCAGATCCTTCCACTGCTGCCAGCATGGAAAATTTGGTGTTTGAAGATGATGATGAGTTCGGTTTTCTGGATTCATACATTGATCCTATGAATAATGAAAGTTTCTGGAAAGAGCTAACACTGGATGACATTTCCTTTAATAATGTACCAATAGTTTCAGAAGATACCAATGGCTGTTTTCAAAGTACAAGTTCTAGCAATAGCAACACCCTTGATTCTCTGCATAAATCAACCAGCGAAAGTATTGTTGTGGATAATGACTTTGGCGGCTTTTTCGATGCATACGCAGAAGCAACCGTTGACAACTTTTGGACACAACCATATGTGGCTGGCATGTCCTCCAACGTTCCAACTGAACTACTTGCTCCCTCCGTTGCAGAATCTGAATATTTTACTCCAATATATGATGATCTGTGGGGCCAAACTCATTTGTATTATTAG 957 0.4127 MVRTPSCDKSGMRKGTWTLEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPDVKRGNFTQQEEEFIIRMHKKLGNRWSTIAAELPGRTDNEIKNHWHTTLKKRSQQNTLTKEEARASKSKDKVLPNKGVTVTLPATSSQFSDNSSLSPASSTSSEFSNITSDPSTAASMENLVFEDDDEFGFLDSYIDPMNNESFWKELTLDDISFNNVPIVSEDTNGCFQSTSSSNSNTLDSLHKSTSESIVVDNDFGGFFDAYAEATVDNFWTQPYVAGMSSNVPTELLAPSVAESEYFTPIYDDLWGQTHLYY* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2466 318 Gene3D - 6 67 - -
Gso6g2466 318 CDD SANT 69 112 IPR001005 -
Gso6g2466 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso6g2466 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso6g2466 318 MobiDBLite consensus disorder prediction 142 174 - -
Gso6g2466 318 CDD SANT 16 61 IPR001005 -
Gso6g2466 318 SMART sant 66 114 IPR001005 -
Gso6g2466 318 SMART sant 13 63 IPR001005 -
Gso6g2466 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso6g2466 318 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 254 - -
Gso6g2466 318 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso6g2466 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso6g2466 318 Gene3D - 69 139 - -
Gso6g2466 318 MobiDBLite consensus disorder prediction 118 134 - -
Gso6g2466 318 MobiDBLite consensus disorder prediction 112 174 - -
Gso6g2466 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso6g2466 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Gso6g2466 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2466 Gso-Chr6 46342749 46344256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2466 1 154 MYB Transcription Factor Family AT2G31180 56.129 5.22e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g2466 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2466 K09422 - gmx:778087 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0861 12 9515271 9516720 Gso6g2466 6 46342749 46344256 GST
Gso12g1684 12 40461396 40463887 Gso6g2466 6 46342749 46344256 PCT
Gso11g3184 11 47625901 47633007 Gso6g2466 6 46342749 46344256 PCT
Gso6g2466 6 46342749 46344256 Gso12g1685 12 40478986 40480863 PCT