Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2465 ATGGTAAGAGCTCCTTTCTATGACAAAAATGGACTCAAGAAAGGTGCATGGAGTAGAGAAGAAGATGAGAAGTTAACAGCTTATGTTAAGAGACATGGTCACTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAGACCAAATCTAAAACACGGGAACTACACCCTAGAGGAAGAAAAAATAATCATCAAATTACACCAAGAATTTGGAAATAAATGGTCCTTGATTGCTGAAAAGCTTCCTGGAAGAACAGACAATGAGGTCAAGAACTATTGGCATGGCCATCTTAAGAAGATAAAAAGCAATGAGATCACTACATCAAAGTTGAAGTCCAAGCCAGGCTATAGTATTGAAGTAAATTCAAATGAGACTCATCAATGTGAAAAATCTGAAAGCCCTTATGCTGATGTTGGTGATGACTTCCCTTATATTTTAGAAAGCTCATTGGCCATGTCCAGGGAAAGTACCTCAGAAGGAGACAACTATTCCCTTACCTCTATTGTTTCACTATCAACCATGGATAGTTCCTTATCAAAAGAAGAATCTGTTCCTCCATTGGTATCATACGAAGAATTCAGCAGCGATTTTTGGACTGAACCATTCCTCACAGAAGATACGTTTACTAATGAGATATGTAGTGGTGAAGGCATAGCATTACTAATTCCAAATTTTGATGGTGCATATCTGTTGTAG 741 0.3846 MVRAPFYDKNGLKKGAWSREEDEKLTAYVKRHGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTLEEEKIIIKLHQEFGNKWSLIAEKLPGRTDNEVKNYWHGHLKKIKSNEITTSKLKSKPGYSIEVNSNETHQCEKSESPYADVGDDFPYILESSLAMSRESTSEGDNYSLTSIVSLSTMDSSLSKEESVPPLVSYEEFSSDFWTEPFLTEDTFTNEICSGEGIALLIPNFDGAYLL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2465 246 CDD SANT 69 112 IPR001005 -
Gso6g2465 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso6g2465 246 CDD SANT 16 61 IPR001005 -
Gso6g2465 246 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso6g2465 246 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Gso6g2465 246 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 226 - -
Gso6g2465 246 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso6g2465 246 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso6g2465 246 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso6g2465 246 Gene3D - 69 145 - -
Gso6g2465 246 PANTHER MYB TRANSCRIPTION FACTOR 1 226 - -
Gso6g2465 246 SMART sant 66 114 IPR001005 -
Gso6g2465 246 SMART sant 13 63 IPR001005 -
Gso6g2465 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso6g2465 246 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2465 Gso-Chr6 46332217 46334135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2465 1 165 MYB Transcription Factor Family AT5G10280 48.485 9.03e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g2465 Myb_DNA-binding 7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2465 K09422 - gmx:100776043 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1685 12 40478986 40480863 Gso6g2465 6 46332217 46334135 PCT