Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2449 ATGCGTTGGTCTTCCTTCTACCACACAGCCTCCAGGGTTTTCAATGAGTATCCATCATGGTCCAAGTCTGTTGTTGTATGCACTGTCATCAGTGGAGGTCTAGTGGCATATTGCGATGCCAAACCAGAATATGCTAATCAAAGTCAAAAAAAGAAGGTGGTGGTGCTTGGAACTGGCTGGGCTGGAACCAGCTTTTTGAAAAACATGAAAAGCAACTCCTATGATATTCATGTGGTTTCACCACGTAACTACTTTGCATTCACTCCATTGCTACCAAGTGTCACGTGTGGCACAGTGGAAGCAAGGAGCGTCGTTGAACCGATTCGCAGTATCACACGAAAGAGCGGTGTAAATATTCATTTCAGTGAAGCTGAATGCTATAAGATCGATAACAAGAACAACAAAGTTTATTGCCGTGCTAGTAAAGACAAAAAGTTGGGTGGCCAAGAAGACTTTTCCATTGATTATGATTACCTGGTAATAGCCATGGGAGGCCGTTCTAATACCTTCAACACACCTGGTGTTCAAGAGCATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAAAATTCGTCATACAGTGGTTGACCTTTTTGAAAGAGCTAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTGAGTTTCGTAGTTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCTGAGCTTCATGACTTTGTGCTTGAGGATATGGCTAAGTTATATCCTTCCCTTAAAGACTATGTGAAGATTACTCTCCTGGAGGCAGGCGAACATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAACAAAAGTTTGCCAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAACGAAATCACTGCCAAAGAAAGGTCAAGTGGACAAATTGTTTCTATACCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAGTAGTTGAATTTATGAAGCAGCTTGGCCAGGTTAATAGACGTGCACTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTACGCTCTAGGTGATTGTGCTACTATAAATCAACGTAGAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACAATTCTGGAAAATTAGATCTTCAAGAATTTAAAGAAGTTGTTGGCGACATTATTGACAGGTATCCACAAGTGGACATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCAGCTTGCTAAAGAAATCTCAAGAAAGCAATATTATAGTGGACATTGAATACTTTAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCACAACAAGGAGTCTATCTTGCAAACTGTTTCAACCGCATGGAGGAGTGTGAGAAGTATCCAGAAGGCCCTCTCAGGTTCAGGGGAGTTGGACGCCATCGGTTCCGTCCCTTCAGGTACAAGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTATGGTATTCGGTGTATACAAGCAAACAAGTGAGCTGGAGGACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGGCGATTCATATTTGGAAGGGACTCAAGTAAAATCTAA 1716 0.4283 MRWSSFYHTASRVFNEYPSWSKSVVVCTVISGGLVAYCDAKPEYANQSQKKKVVVLGTGWAGTSFLKNMKSNSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSVVEPIRSITRKSGVNIHFSEAECYKIDNKNNKVYCRASKDKKLGGQEDFSIDYDYLVIAMGGRSNTFNTPGVQEHAHFLKEVDEALKIRHTVVDLFERASLPSLPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVLEDMAKLYPSLKDYVKITLLEAGEHILNMFDKRITEFAEQKFARDGIDVRLGSMVVKVGENEITAKERSSGQIVSIPHGMVVWSTGIGARPEVVEFMKQLGQVNRRALVTDEWLRVEGSDNIYALGDCATINQRRVMEDIAVIFSKADKNNSGKLDLQEFKEVVGDIIDRYPQVDIYLKKNQMKDMASLLKKSQESNIIVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLANCFNRMEECEKYPEGPLRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRFLVVGDWGRRFIFGRDSSKI* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2449 571 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Gso6g2449 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 53 72 - -
Gso6g2449 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 156 174 - -
Gso6g2449 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Gso6g2449 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 345 367 - -
Gso6g2449 571 SUPERFAMILY FAD/NAD(P)-binding domain 209 370 IPR036188 -
Gso6g2449 571 Gene3D - 418 571 - -
Gso6g2449 571 Gene3D - 43 388 - -
Gso6g2449 571 Pfam Pyridine nucleotide-disulphide oxidoreductase 51 376 IPR023753 GO:0016491
Gso6g2449 571 SUPERFAMILY EF-hand 367 457 IPR011992 -
Gso6g2449 571 SMART efh_1 377 405 IPR002048 GO:0005509
Gso6g2449 571 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Gso6g2449 571 PANTHER NADH DEHYDROGENASE 69 571 IPR045024 GO:0003954|GO:0006116
Gso6g2449 571 SUPERFAMILY FAD/NAD(P)-binding domain 50 269 IPR036188 -
Gso6g2449 571 PANTHER NAD(P)H DEHYDROGENASE B2 69 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2449 Gso-Chr6 46179209 46184762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2449 1 571 Chloroplast and Mitochondria Gene Families AT4G21490 66.954 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2449 K03885 - gmx:100820044 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0876 12 9819574 9824591 Gso6g2449 6 46179209 46184762 GST