Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2428 ATGGAGACTGTTCTTTTCAATCACTCCCCACCTTTGGAATTCAAGGGTTTGAGCAAGGAGGAGGAAGACTCATTGCTAGGGCAAGTGGAAATATGGAGGTACATGACATGCTTCACGGACTCCGTGGCCTTGAAAGCTGTCATAGAGCTTCGTATAGCGGACATACTAGACCGTTATGGTAAACCACTATCCTTGTCGCAAATTGTGGAGAACATAGAAGACGCACCCTCCCCAGATGCCTCTCTTCTCCAGAGAGTCCTGAGAGTGATGGTGCGCAGAAAGATCTTCAGTGCACAAGAATCAGAGACAGGAGAAACCCTCTTCGGCTTGACACGAGCCTCGAAGTGGATCCTTCGCGACACGAAAATGACCCTAGCACCCATGTTGCTGCTGGAGAACCACCCAATTCACCTGAACCCTGCGCACTACATCAGTGAGATTATTAGAGAAGGCACAAAAAATGGCACTGCTTTCTTTAAGTGCCATGGACATGAGCAATTTGAGATGACGGGTTTGGATCCTGAGTATAATAGGTTGTTCAATGAGGGCATGGTGTGCACTGCTAGGGTTGTGTCCAAGGCTGTGATCACTGGCTACAAAGATGGGTTCAACCAGATTAAGTCCTTGGTTGATGTTGGAGGTGGCATTGGAGGGTCTCTTTCGGAGATTGTTAGGGCTTATCCTCATATCAATGCCATCAACTTTGACTTGCCTCATGTGGTTGCCACTGCTCCTAAGTTCGATGGGATCACCCATGTTGGAGGTGACATGTTCGTGTCCATTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTGCATGACTGGAGCGACGAGCACTGCATCAAGATCTTGAAGAACTGCAGGAAGGCAATACCAGAGAAGACAGGAAAAGTCATAATCGTGGATCACGTTCTTCGACCCGAAGGCAACGAACTCTTCACAGACGTTGGCATCGCATTCGACATGATGCTTCTCGCTCACAACGCCGGTGGCAAAGAGAGGACCGAAGAGAACTGGAAGTGGCTGTTCAAGGAAACCGGTTTCGCGCGTTACAACATCATCAAGATCAACGCTCTCCCTTCCATCATTGAGGCGTTTCCAATCTGA 1110 0.4847 METVLFNHSPPLEFKGLSKEEEDSLLGQVEIWRYMTCFTDSVALKAVIELRIADILDRYGKPLSLSQIVENIEDAPSPDASLLQRVLRVMVRRKIFSAQESETGETLFGLTRASKWILRDTKMTLAPMLLLENHPIHLNPAHYISEIIREGTKNGTAFFKCHGHEQFEMTGLDPEYNRLFNEGMVCTARVVSKAVITGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHINAINFDLPHVVATAPKFDGITHVGGDMFVSIPSADAIYMKWILHDWSDEHCIKILKNCRKAIPEKTGKVIIVDHVLRPEGNELFTDVGIAFDMMLLAHNAGGKERTEENWKWLFKETGFARYNIIKINALPSIIEAFPI* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2428 369 SUPERFAMILY "Winged helix" DNA-binding domain 24 120 IPR036390 -
Gso6g2428 369 PANTHER O-METHYLTRANSFERASE 20 368 IPR016461 GO:0008168
Gso6g2428 369 PIRSF O-mtase 12 369 IPR016461 GO:0008168
Gso6g2428 369 Gene3D Vaccinia Virus protein VP39 119 369 IPR029063 -
Gso6g2428 369 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 20 368 - -
Gso6g2428 369 Pfam Dimerisation domain 43 91 IPR012967 GO:0046983
Gso6g2428 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 368 IPR016461 GO:0008168
Gso6g2428 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 366 IPR029063 -
Gso6g2428 369 CDD AdoMet_MTases 209 306 - -
Gso6g2428 369 Pfam O-methyltransferase domain 143 350 IPR001077 GO:0008171
Gso6g2428 369 Gene3D - 15 117 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2428 Gso-Chr6 45917329 45923860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2428 42 355 Monolignol Biosynthesis Gene Families AT5G54160 38.941 1.97e-77 241