Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2426 ATGGCTAACAATAGGGAAAAGTCTACCAAGGAGGGTGTTGAAGAGACTCATCATCACAAGGTGATTGGTGAAAGTGAAGGCCAAGATTGGGAGATTGAGAAAGGAAAGGGTCTTGATTTGAGCTCAGGGAGGAGACAATGGAAGCCAGTTTTTGATGATGCTTCCCTGTCACACAGGCCTCTCAAGAAAATCCGAAGCCCCGAACGCGAAAACCCGAATCAACAACAACAACAACCAGCATCCTCTATGCTGTCTCTTCAGCCTCCTTCATCAAGAATAGTGTTTCCTTTTGCTTTTGAAGGCTCTCAACATCCAATGCCATTCCCACACCCTTTTGGAACCACAAACTTGCCTCTTTTTCGTCCAAATCTTCATCCAACTCAACAAATGATATCTTTTGGGTCCCAACAGAACATGGGGTATCCACCATTCCTAGCCCCAGAATCTACCATGCCACACCAACACCAACAACACCTTCAACAACATCATCAACAGCTTCTTCATTATTGGAGTGATGCAATAAATTTGAGTCCAAGAGGGAGGATGATGATGATGATGAATAGGACTGAAGGAAGACAAATATTAAGGCCACAAGCACAGCCTCTGAATGCTACCAAGCTCTATAGAGGAGTGAGGCAACGCCATTGGGGCAAATGGGTAGCCGAGATTCGTCTCCCTCGCAATCGAACTCGCCTTTGGCTTGGAACCTTTGACACTGCTGAAGATGCTGCTATGGCTTATGATCGCGAAGCCTTTAAGCTTAGAGGGGAAAATGCTAAGCTCAATTTCCCTGAACTCTTTCTCAACAAAGATAAAGCAGAACAATCCACAACTGTTGCTCCTGCTTCTTCTTCTAATGAAGGTTCAACATCAACATCAAGCCAGAACACAAAGCAACCAGAACCAATACCAGAAGAGATTAACACTGAGAGTGAGGACATACCACCAACAGAGACAATAGCAGAAGAGAATGCTGAAACTGGAAAAGGAATTTCACAACCTCAGGAATTGGTTTGGGGTGAATGGTTCAATGCAATTCCTGCAGGTTGGGGTCCTGGAAGTCCTGTGTGGGATGATTTGGACCCCAACAATAATCTTCTTTTGCATTCACAACTTCCCTTTGTGAATCCAAATCAGCAAGAGTTTCATGATGATGCTGGTGCTTCTTCTCAGATACAACAAGAAGATAACAGCACAGAACCAGGTTCTTCTTCCTCTCCCTCTTTTCCCATGAGGCCCTTCTTCTGA 1248 0.4471 MANNREKSTKEGVEETHHHKVIGESEGQDWEIEKGKGLDLSSGRRQWKPVFDDASLSHRPLKKIRSPERENPNQQQQQPASSMLSLQPPSSRIVFPFAFEGSQHPMPFPHPFGTTNLPLFRPNLHPTQQMISFGSQQNMGYPPFLAPESTMPHQHQQHLQQHHQQLLHYWSDAINLSPRGRMMMMMNRTEGRQILRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEQSTTVAPASSSNEGSTSTSSQNTKQPEPIPEEINTESEDIPPTETIAEENAETGKGISQPQELVWGEWFNAIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNPNQQEFHDDAGASSQIQQEDNSTEPGSSSSPSFPMRPFF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2426 415 MobiDBLite consensus disorder prediction 274 315 - -
Gso6g2426 415 CDD AP2 206 266 IPR001471 GO:0003700|GO:0006355
Gso6g2426 415 MobiDBLite consensus disorder prediction 51 69 - -
Gso6g2426 415 MobiDBLite consensus disorder prediction 70 87 - -
Gso6g2426 415 Gene3D AP2/ERF domain 207 265 IPR036955 GO:0003700|GO:0006355
Gso6g2426 415 MobiDBLite consensus disorder prediction 1 87 - -
Gso6g2426 415 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700|GO:0006355
Gso6g2426 415 MobiDBLite consensus disorder prediction 274 304 - -
Gso6g2426 415 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700|GO:0006355
Gso6g2426 415 PRINTS Ethylene responsive element binding protein signature 230 246 IPR001471 GO:0003700|GO:0006355
Gso6g2426 415 Pfam AP2 domain 208 256 IPR001471 GO:0003700|GO:0006355
Gso6g2426 415 MobiDBLite consensus disorder prediction 1 41 - -
Gso6g2426 415 MobiDBLite consensus disorder prediction 375 415 - -
Gso6g2426 415 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 415 - -
Gso6g2426 415 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 415 - -
Gso6g2426 415 SMART rav1_2 207 270 IPR001471 GO:0003700|GO:0006355
Gso6g2426 415 SUPERFAMILY DNA-binding domain 207 265 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2426 Gso-Chr6 45882365 45885119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2426 32 361 AP2-EREBP Transcription Factor Family AT4G28140 41.791 4.06e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g2426 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2426 - - gmx:100811328 782.711