Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2420 ATGAACATTCTCTTTGAAAAGCTTCTTTCTCAATTTCCTCAAGTCATTCCTTGGTCTTTTGCCATAGTTATAATCTCTCTTCATGTTAGTTCTGTGAGTCTACCAAACTATGAAAGTATCCCAGCAGTGATTGTGTTTGGGGACTCTATAGTGGATACGGGTAACAATAACTACATCAACACCATAGCAAAATGCAATTTTCTACCATATGGTAGAGATTTTGGTGGAGGAAATCAACCAACTGGGAGGTTCAGCAATGGTTTAGTCCCATCAGACATCATAGCTGCAAAATTTGGAGTCAAGGAGCTTTTGCCACCTTATCTTGATCCAAAATTGCAACCTCAAGATCTCCTCACAGGTGTAAGCTTTGCATCTGGTGCTAATGGATATGATCCTCTAACTTCTAAAATAGCATTAGTGTGGTCATTGTCAGATCAACTGGACATGTTCAGGGAGTACAAAAACAAGATAATGGAAATAGTTGGAGAAAACAGAACGGCAACAATAATATCAAAAGGCATTTACATCCTGTGCACAGGAAGTAATGACATTACCAATACTTACGTATTTAGGCGAGTAGAATATGACATTCAAGCATACACAGACTTAATGGCGTCACAAGCCACAAACTTCTTGCAGGAACTTTATGGACTAGGAGCTAGAAGGATTGGAGTAGTTGGTTTACCGGTTCTAGGGTGTGTGCCCTCACAGAGAACAATTGACGGAGGCATATCCAGAGCATGTTCAGATTTTGAAAACCAGGCTGCAGTGCTCTTCAACAGCAAGCTCTCATCCCAAATGGATGCTCTTAAGAAACAGTTTCAAGAGGCTAGACTTGTCTATCTTGACCTTTACAACCCATTACTACATTTGATTCAAAACCCAGCTAAATATGGTTTTGAAGTAATAGACAAAGGATGCTGTGGCACAGGAAATTTGGAAGTAAGCTTAATGTGCAACCATTTCGTCTTGCACATATGTTCAAACACCTCAAACTACATATTCTGGGACAGTTTCCATCCTACACAAGCAGCCTATAATGTAGTTTGCTCTCTGGTGCTTGATCACAAAATCAAGGACTTCTTCTAA 1089 0.3985 MNILFEKLLSQFPQVIPWSFAIVIISLHVSSVSLPNYESIPAVIVFGDSIVDTGNNNYINTIAKCNFLPYGRDFGGGNQPTGRFSNGLVPSDIIAAKFGVKELLPPYLDPKLQPQDLLTGVSFASGANGYDPLTSKIALVWSLSDQLDMFREYKNKIMEIVGENRTATIISKGIYILCTGSNDITNTYVFRRVEYDIQAYTDLMASQATNFLQELYGLGARRIGVVGLPVLGCVPSQRTIDGGISRACSDFENQAAVLFNSKLSSQMDALKKQFQEARLVYLDLYNPLLHLIQNPAKYGFEVIDKGCCGTGNLEVSLMCNHFVLHICSNTSNYIFWDSFHPTQAAYNVVCSLVLDHKIKDFF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2420 362 Coils Coil 260 280 - -
Gso6g2420 362 CDD SGNH_plant_lipase_like 41 355 IPR035669 -
Gso6g2420 362 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 2 361 - -
Gso6g2420 362 SUPERFAMILY SGNH hydrolase 174 355 - -
Gso6g2420 362 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 43 54 IPR008265 GO:0006629|GO:0016298
Gso6g2420 362 Pfam GDSL-like Lipase/Acylhydrolase 43 350 IPR001087 GO:0016788
Gso6g2420 362 Gene3D SGNH hydrolase 31 357 IPR036514 -
Gso6g2420 362 PANTHER GDSL ESTERASE/LIPASE EXL3 2 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2420 Gso-Chr6 45834855 45837638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2420 39 357 Pollen Coat Proteome AT1G75910 39.329 1.06e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2420 - - gmx:100809562 722.62