Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2406 ATGGCCTTAGATCACTTTGAGGAGACTGTGCACCAAAAAGGAAATTGGAAATCTTCCAGTGAAATCATTGCAGATTCTGATAGAAATGCCTCTGGTGACTTTGACTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTGACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACAAATGGCTTCATTTTCAAAGCACCTCTTTGGATGATGAAGAACAACAGAGGCCACAATGTCCTGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATACGGCCGTGGCCAAACCACATTACCTTCTAAAGGGAAGCCACGTCAAGTAGGCACTGTCATACCACAAAGACCTCATGGTCCAAGAACACTTAACACTAGAAGTGTTTCACAACCTATTTCTCAAAGTTACCATCCCTATAGTAATCCTTATCATCCTCAACAACACTTCAACTCGATTCCAAGCGGTTACACCTCACCTATGATTAGAACAACTGGTTCAATAGACAACACATTTGGAATCTTTGGTGAGATGATATATGCAAGGGTCTTTGGTAACCACGTGTCAAACATTCATACATACGCCAATTCGTACAATCTTTCGGGGACCAGTAACCCAAGGATGAGAAGACATTTAATGCAAGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTTTGCTGCCTAGTTTTGTGTCTGCTCTTATTCTGA 723 0.4191 MALDHFEETVHQKGNWKSSSEIIADSDRNASGDFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLDDEEQQRPQCPVCKSEVSQSSLVPLYGRGQTTLPSKGKPRQVGTVIPQRPHGPRTLNTRSVSQPISQSYHPYSNPYHPQQHFNSIPSGYTSPMIRTTGSIDNTFGIFGEMIYARVFGNHVSNIHTYANSYNLSGTSNPRMRRHLMQVDKSLSRISCFLLCCLVLCLLLF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2406 240 MobiDBLite consensus disorder prediction 100 127 - -
Gso6g2406 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 113 IPR013083 -
Gso6g2406 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 240 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso6g2406 240 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Gso6g2406 240 SUPERFAMILY RING/U-box 32 97 - -
Gso6g2406 240 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Gso6g2406 240 Pfam RING-type zinc-finger 36 82 IPR027370 -
Gso6g2406 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 9 240 - -
Gso6g2406 240 CDD RING-HC_AtRMA_like 34 86 - -
Gso6g2406 240 SMART ring_2 36 84 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2406 Gso-Chr6 45702257 45704995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2406 21 240 C3H Transcription Factor Family AT4G28270 40.175 3.75e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2406 K10666 - gmx:100786373 481.485