Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso6g2398 | ATGGGTTGCATATGTTCTAAGAGTTCAGCTATAGAGGACAGCAAGGAAAGTGTCACTAAGAAATTTCAATCGTATAGCACACGGCCTTCAGAGTTGAATGTTTTACGGTTGAATTCAACTAGGAGGGTTGATGAGGGTGGGGTGAAAGATGTGTTAATAGATGGTGGTCATGTGAAGGGTTCATTGATTGAAAGGAAGGCCAATGGTTCAGGGCAGTTGTATGGTGATCATCATGATGTGAAGAAGAAATTAGAGAAGCCGGGATTGACTGTCGTGGATCATATCGGCCCTGGAAGGGTTCCAAAGGCTATAGAAGGAGAGCAAGTTGCGGCAGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGTAGTGCAAATACTTTTGAGAGGTTACATAAAATTGGGCAAGGAACTTACAGTACTGTATATAAGGCACGGGATGTGATTAACCAAAAGTTTGTAGCATTGAAGAAAGTACGCTTTGACAATCTGGATCCCGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATAATTAAATTGGAGGGCTTGATTACATCACGAATGTCTCGCAGCCTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACGGGACTTGCATCAAATCCTGATATTAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGCCATAGTCATGGTGTCCTCCATCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAGTTTTAAAGATTGCTGATTTTGGTTTGGCAAGTTCTTATGACCCTCACCACAATGTTCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCCAATCATTATGGGGTTGCAGTGGATTTATGGAGCACTGGTTGCATACTGGGGGAACTATATACTGGAAGGCCAATTTTGCCTGGAAAAACGGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGATGACTATTGGCTTAAATTGCGGTTGTCACATTCAACAGTATTCAGGCCGCCACACCATTATAGGAAATGTGTTGCAGATACATTTAAGGACTACCCATCTACCGCGGTAAAGCTTATAGAGACCCTACTTTCTGTAGAGCCAGCACATCGAGGGTCTGCAGCAGCTGCTCTGAAAAGTGAGTTCTTTACGTCAGAGCCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATGCTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCCAGAAGGCAAAGAGCTGTTGGAGGTAGGGAACAAAAAGTTGCCTCAGGAGTTGGACAGGAAAAAGGGCATAGAGCAAATGTTGCAACAAAAGACAATGCTGACCCAGGCTTATTGGTGCAGCAAGGACGTTATTCCAGCTCAAGGAACCAAAGTGAATTATCCAACCCTCATAGAGGAACGGTGTCTGGAATTCTGGTTTTCCCTCACAAACAGTCAGAAAAAGAAATGGATAATAATTTCTCTGGGCATATCTATAAGAGGCCTTCACATTCCGGCCCATTGGTTCCTGGTTCTGTCTGGGCAAAAGGCAGGAAGGAAGTTGATGATGTACCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACTTTGCCTGAAGATCAGGAGGTTAAACCGGTTCACTTGCACCACAGAAAACCAATTGAAGTAAGAAAATCTGTGGAGTCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATTGTTGATCTCAATCAAATTGAAAGTAGAAGGGTCGCGGCTGAAAAATCAACTCCGGGCGGGCGCGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTTTCGTCAAGCAACATGGATCAGATGCTCAAAGATCATGACAGAAAGATCCAAGAGTTTTCAAGACGAGCGAGAATCGACAAGTCAAGAGCAAGAGGTGAGAAAGTTCGTGCTCTGCGGAAGTAG | 2091 | 0.439 | MGCICSKSSAIEDSKESVTKKFQSYSTRPSELNVLRLNSTRRVDEGGVKDVLIDGGHVKGSLIERKANGSGQLYGDHHDVKKKLEKPGLTVVDHIGPGRVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVINQKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLITSRMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASSYDPHHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKLRLSHSTVFRPPHHYRKCVADTFKDYPSTAVKLIETLLSVEPAHRGSAAAALKSEFFTSEPLPCDPSSLPKYAPSKEIDAKLRDEARRQRAVGGREQKVASGVGQEKGHRANVATKDNADPGLLVQQGRYSSSRNQSELSNPHRGTVSGILVFPHKQSEKEMDNNFSGHIYKRPSHSGPLVPGSVWAKGRKEVDDVPPVSNRVNLSKLSGLVASRTLPEDQEVKPVHLHHRKPIEVRKSVESTNGSESRRRQDQKRIVDLNQIESRRVAAEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKDHDRKIQEFSRRARIDKSRARGEKVRALRK* | 697 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso6g2398 | 696 | MobiDBLite | consensus disorder prediction | 448 | 485 | - | - | |
Gso6g2398 | 696 | CDD | STKc_CDK9_like | 136 | 420 | - | - | |
Gso6g2398 | 696 | Gene3D | Transferase(Phosphotransferase) domain 1 | 219 | 459 | - | - | |
Gso6g2398 | 696 | Pfam | Protein kinase domain | 136 | 420 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso6g2398 | 696 | ProSiteProfiles | Protein kinase domain profile. | 136 | 420 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso6g2398 | 696 | SMART | serkin_6 | 136 | 420 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso6g2398 | 696 | ProSitePatterns | Protein kinases ATP-binding region signature. | 142 | 165 | IPR017441 | GO:0005524 | |
Gso6g2398 | 696 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 256 | 268 | IPR008271 | GO:0004672|GO:0006468 | |
Gso6g2398 | 696 | MobiDBLite | consensus disorder prediction | 675 | 696 | - | - | |
Gso6g2398 | 696 | SUPERFAMILY | Protein kinase-like (PK-like) | 129 | 428 | IPR011009 | - | |
Gso6g2398 | 696 | PANTHER | CELL DIVISION PROTEIN KINASE | 1 | 683 | - | - | |
Gso6g2398 | 696 | MobiDBLite | consensus disorder prediction | 675 | 689 | - | - | |
Gso6g2398 | 696 | Gene3D | Phosphorylase Kinase; domain 1 | 123 | 218 | - | - | |
Gso6g2398 | 696 | PANTHER | CYCLIN-DEPENDENT KINASE | 1 | 683 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso6g2398 | Gso-Chr6 | 45592135 | 45599006 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso6g2398 | 128 | 462 | Core Cell Cycle Gene Families | AT5G10270 | 48.433 | 1.13e-111 | 345 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CDK-CRK7-CDK9 | Gso6g2398 | Pkinase | 6e-69 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso6g2398 | - | - | gmx:100807590 | 1402.88 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso12g0941 | 12 | 11197302 | 11204111 | Gso6g2398 | 6 | 45592135 | 45599006 | GST | |
Gso12g1736 | 12 | 40980120 | 40985696 | Gso6g2398 | 6 | 45592135 | 45599006 | PCT | |
Gso11g3127 | 11 | 47155471 | 47160986 | Gso6g2398 | 6 | 45592135 | 45599006 | PCT | |
Gso6g2398 | 6 | 45592135 | 45599006 | Gso12g1736 | 12 | 40980120 | 40985696 | PCT | |
Gso6g2398 | 6 | 45592135 | 45599006 | Gso11g3127 | 11 | 47155471 | 47160986 | PCT |