Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2397 ATGTTTATCTTTGATTGCATAATAACTTTCCTTTTGCTCATTGCCATATTTCTTCCTCTTAGCAACAAAAAAAAAAATCTTAAACAATCTCTTCCATCTTCAATGTCTACCTCTACCTTTCTCATTTCTCTGCTTGTTTTCATCACAAACCTTACCCTTCTTCTTCTTCTAACCTCAGTTTCATGCACAGAGTTCATCTACAACACCAACTTCAACTCCACCAACACCCTTCTACATGGCAACGCCACCATAGAATCTTCCATCCTCACCCTTACCAACAGTTCCACCTTCTCTGTGGGTCGTGCTTTCTACCCTTTTAAGATCCCCACAAAACCTTCCAACTCTTCAACCCCTTTACCATTCTCAGCCTCATTCATTTTCTCCATTGCACCATTCAAAGACCTTCTCCCTGGCCATGGCTTTGTCTTCATACTGACAGCTTCTGCAGGCACCACTGGGGTGAACTCTGCTCAGCATCTTGGCCTCTTTAACTATACCAACAATGGTGATCCCAACAACCATGTCTTTGGGGTTGAGTTTGATGTGTTTGATAACCAAGAGTTCAATGACATCAATGACAACCATGTGGGGGTGGACATAAACTCTCTTTCTTCTTTTGCTTCCCATGATGCTGGATTTTGGGGTGGCAGTGACAACGACGAGTTCGAGGATTTGAAGCTTAATGATGGCGAGAACTATCAGGTGTGGATTGAATATTTGGATTCTAGAGTCAATGTCACAATGGCTCCTGCAGGCCAAAAAAGGCCTCAGAGGCCCTTGATTAGTGAAATTGTGGATCTTTCTGAAGTTCTTTTGGATGAAATGTTTGTTGGATTTTGTGGGGCAACAGGGCAGCTTGTGGAGAGTCACAAGATTTTGGCTTGGAGCTTTAGTAACTCAAATTTTTCCATTGGTGATGCTTTGGTCACTACAAATTTGCCTTCATTTGTTCTTTCCAAAGAGTCTATTTTGAGGTCAACAGGTTTTATTGTAGGGATCATTGTAGGTGTTTTGTTTGTCCTTAGTGCTGCTGTTGTGATATTTGTGTTTTTTCTCAGAAGAAAAAGGAGTAAAAGAAAGGATGAAGAAATTGAAGATTGGGAACTAGAGTATTGGCCTCACCGTGTTAGTTATGAAGATATTTATGCTGCTACTAAAGGATTTTCAGACCAACATGTAATTGGATTTGGAGGGAATGGTAAAGTCTACAAAGGGCTTCTGCAAGGAGTGCAAGTTGCAGTGAAAAGAATTCCATGTGACAGTGAACATGGAATGAGAGAGTTTTTGTCTGAGATTTCAAGTTTAGGCAGGTTGAAGCATAGGAATGTGGTTCCAATGAGAGGTTGGTGTAAGAAAGATAGGAGCCTGATTTTAATATATGACTATATGGATAATGGTAGTTTAGATAAAAGAATATTTGATGATGATGAGAACACAATTTTTGGGTGGGAGAAGAGAATCAAGGTGCTGAAGGATGTAGCACATGGAGTATTGTATTTGCATGAGGGTTGGGAGGTTAAGGTGTTGCACAGAGACATCAAGTCAAGCAATGTGTTACTTGATAAGGGTATGAATGCAAGATTGGGGGATTTTGGACTAGCAAGAATGCACAATCATGAGCAAATTGCTCATACCTCACAAGTGATTGGAACTGTTGGATTCATGGCACCAGAACTTATTCACACCGGGAGAGCCTCAACACAGACCGACGTTTTCAGCTTTGGAGTGTTGATTTTAGAGGTGGTGTGTGGGAGAAGACCAAATGAAGAAAACAAGCCTTTGGTTGCTTGGTTATGGAGGCTAAAGCAGAGAGGAGAAGAGTGTTCTGCTCTTGATGAAAGATTAAAAAAGAGGGGTGAATGTAACATTGATGAGGTTAAGAGGGTTCTTCATCTTGGTTTGTTGTGCACTCATCATGACCCTCATGTTAGGCCAAGTATGAGAGAGGTTGTGAAGGTGCTTGAGGGAGAGAATTTAGATATGAGCTTGCTTGACAAAATAAATTCAGCAGCTGGATATGTTGGGAGCTTTGTTAACAGATTTCACCCCACAATTAAGGATATTTACTCCTCCAACTGCTCTTTCTCAACTGTGTGTGACAAGGAAGGAAGATGA 2115 0.4104 MFIFDCIITFLLLIAIFLPLSNKKKNLKQSLPSSMSTSTFLISLLVFITNLTLLLLLTSVSCTEFIYNTNFNSTNTLLHGNATIESSILTLTNSSTFSVGRAFYPFKIPTKPSNSSTPLPFSASFIFSIAPFKDLLPGHGFVFILTASAGTTGVNSAQHLGLFNYTNNGDPNNHVFGVEFDVFDNQEFNDINDNHVGVDINSLSSFASHDAGFWGGSDNDEFEDLKLNDGENYQVWIEYLDSRVNVTMAPAGQKRPQRPLISEIVDLSEVLLDEMFVGFCGATGQLVESHKILAWSFSNSNFSIGDALVTTNLPSFVLSKESILRSTGFIVGIIVGVLFVLSAAVVIFVFFLRRKRSKRKDEEIEDWELEYWPHRVSYEDIYAATKGFSDQHVIGFGGNGKVYKGLLQGVQVAVKRIPCDSEHGMREFLSEISSLGRLKHRNVVPMRGWCKKDRSLILIYDYMDNGSLDKRIFDDDENTIFGWEKRIKVLKDVAHGVLYLHEGWEVKVLHRDIKSSNVLLDKGMNARLGDFGLARMHNHEQIAHTSQVIGTVGFMAPELIHTGRASTQTDVFSFGVLILEVVCGRRPNEENKPLVAWLWRLKQRGEECSALDERLKKRGECNIDEVKRVLHLGLLCTHHDPHVRPSMREVVKVLEGENLDMSLLDKINSAAGYVGSFVNRFHPTIKDIYSSNCSFSTVCDKEGR* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2397 704 SUPERFAMILY Concanavalin A-like lectins/glucanases 55 300 IPR013320 -
Gso6g2397 704 Pfam Protein kinase domain 389 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2397 704 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 53 661 - -
Gso6g2397 704 Pfam Legume lectin domain 63 301 IPR001220 GO:0030246
Gso6g2397 704 ProSiteProfiles Protein kinase domain profile. 388 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2397 704 CDD lectin_legume_LecRK_Arcelin_ConA 63 300 IPR001220 GO:0030246
Gso6g2397 704 Gene3D Transferase(Phosphotransferase) domain 1 463 668 - -
Gso6g2397 704 Gene3D - 61 310 - -
Gso6g2397 704 SUPERFAMILY Protein kinase-like (PK-like) 364 655 IPR011009 -
Gso6g2397 704 CDD TM_EGFR-like 326 360 - -
Gso6g2397 704 CDD STKc_IRAK 394 656 - -
Gso6g2397 704 ProSitePatterns Protein kinases ATP-binding region signature. 394 415 IPR017441 GO:0005524
Gso6g2397 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Gso6g2397 704 SMART serkin_6 388 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2397 704 Gene3D Phosphorylase Kinase; domain 1 350 462 - -
Gso6g2397 704 PANTHER - 53 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2397 Gso-Chr6 45586674 45589110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2397 60 605 Receptor kinase-like Gene Family AT4G04960 60.469 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso6g2397 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2397 - - gmx:100807059 1305.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0942 12 11219509 11221898 Gso6g2397 6 45586674 45589110 GST
Gso12g1737 12 40987380 40989783 Gso6g2397 6 45586674 45589110 PCT
Gso11g3125 11 47149239 47152378 Gso6g2397 6 45586674 45589110 PCT
Gso6g2397 6 45586674 45589110 Gso11g3126 11 47152689 47155021 PCT