Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2396 ATGGATCAGCTTGGAATTATTCAACCCTCTTCTTCAACCAAGGTTGAAAGAAGGCTAGTGGAGAAAAACAGAAGAAATCAAATGAAGATCCTCTGCAACAAACTCAACTCTCTTCTCCCTAGCTATAACCCCAAGGAAGCATTACCACTGCCTGACCAAGTGGACGAGGCAATCAACTACATCAAGAGTTTGGAGGCAAAGGTGAAGATGGCACAGGAGAAGAAAGAGTGTTTGCAAGGAATTAGAAAGAGATCCCGTGATTGCTTCTCCAATAATAGTACCAATTTTGCTGCAACTTCTGCAGGTTTCCCAAAATCGCCACAACTTGAGATTCACGAAGTGGGTTCTTCTTTACAAGTTGTTCTTACTTGTGGATTAGACCACCAGTTCATTTTCTCTGAGATCATTCGAATGCTGCATGAAGAGAACATTGATGTTAGAAGTGCCAATTCCTCACTTGCTGGAGACTCGATGCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTTACTTCAATTTGGAGCCACCAAAGTAAGCCAGAGATTGAAAAGGTTTGTGAATGGATCCTGCAGTGATGTGGAAACACAGCCCGAGTTGTGGGATTTTGAAATTGGTACTGATGATATGTGGGGTTTGTATATCTTACAAGGATGCATTTTACCAAATGTTGTGTAA 675 0.4163 MDQLGIIQPSSSTKVERRLVEKNRRNQMKILCNKLNSLLPSYNPKEALPLPDQVDEAINYIKSLEAKVKMAQEKKECLQGIRKRSRDCFSNNSTNFAATSAGFPKSPQLEIHEVGSSLQVVLTCGLDHQFIFSEIIRMLHEENIDVRSANSSLAGDSMLHVVHAEIPQSLLQFGATKVSQRLKRFVNGSCSDVETQPELWDFEIGTDDMWGLYILQGCILPNVV* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2396 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 79 IPR036638 GO:0046983
Gso6g2396 224 Gene3D - 8 92 IPR036638 GO:0046983
Gso6g2396 224 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 193 - -
Gso6g2396 224 Coils Coil 54 81 - -
Gso6g2396 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Gso6g2396 224 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 193 IPR015660 GO:0003700|GO:0006357
Gso6g2396 224 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2396 Gso-Chr6 45560381 45561799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2396 12 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.778 1.14e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g2396 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2396 - - gmx:100805461 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0944 12 11296663 11298187 Gso6g2396 6 45560381 45561799 GST