Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2388 ATGGTGTGTTTGGGGTTTGACATGGTTGAGGTTGACTCTCAAAGATTGAAACTTGAGAGGAGGGGAGTCGGGATTTTGCTCAGAATTTCCTGTGGGTGGTTGGTGTTTATGCTGTTTTTCAGTCCTGTGGCAGGTTTGAGACCCTTGAGGGACAGAACTAATTCATGGGGTGATGAGTGGGTTTTTACAAGAAAAGACGAAAGTGACTTAGGTCCATTTTCACAATGGAACATAAGTGGAACTTACAGAGGGAATTGGAAGTTTATAGATACTACAAATGCCTCTACCGGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTATGCCCACAAAGATAACTGGTGTACACTATGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGAGCTCAAATCAGAGTAGAAGGTGTGTATATATGGCCATATAGGCAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGGGGTTTAAATCAGGATGGAGATTATATTTTATCCAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAGCCTTCACAACATAAGATGTGGAGAAGAAAACATTCTCCATTACATGGCATGGAGAAACATTGCAATGTAGAAATCGCTGCACAGGTTTCACGCCTGTCATCATCAAAACATGAAGGGGAGCATGATTCTTTTCAGTTAGAAGGGTTAATGGAGAGTCCATCTGTGGATAACGATGGGGACTGCTTCTCGCCTTTACAGTTAAATGCAACATCTATTAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTATCTCATTTTTGCAAGTTCTTCTATTAATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGTCAGCAAGCTATAGTGGATGCTTATCTTTGCCTTATACATTTGACTGCAGGAATACTAGTTGAATCCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCGAGTAGGCCTTTGAGCAGTGGTGAAGGTTGGGAGACAATGAGACGTGAATTGTCGGTTTTATACAGTCGTTTCTATGGGATCCTATTGGGAGGCATACTGCTCATGTATGAATTCCACTATCATTTGAGACTCATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTTATTCGTGACTCACGCAAGCCTTTGCATCCTCATTATATCTTAGGCATAACTGTTACTAGGCTAGCGATCCCATTATATATTTTTGGTTGTCCTGACAACTTCCTGCGCATAGAACCAGATCAGAGCTGGTGTGTTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTGCTTCAGCACTATTTTGGGTCCTTGTGGTTCATTCCTCGTCAGTTTCTACCTGAGAAATACTGCTATTATAGGAGGTTTGCTCAAGATACAAACCATGCCACAGACTGTGTTATATGCATGACGGCCATTGATATTTCTCCGCGATCTAACGATTGCATGGTGACCCCTTGTGACCATTTTTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCTACTTGCCGACGCCCTCTTCCACCTGCATGA 1728 0.4097 MVCLGFDMVEVDSQRLKLERRGVGILLRISCGWLVFMLFFSPVAGLRPLRDRTNSWGDEWVFTRKDESDLGPFSQWNISGTYRGNWKFIDTTNASTGFPDIRKINGNSVIELVSMPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQEPSQHKMWRRKHSPLHGMEKHCNVEIAAQVSRLSSSKHEGEHDSFQLEGLMESPSVDNDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSSGEGWETMRRELSVLYSRFYGILLGGILLMYEFHYHLRLILLLVYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPDNFLRIEPDQSWCVCLAIFVGLQAAILLLQHYFGSLWFIPRQFLPEKYCYYRRFAQDTNHATDCVICMTAIDISPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2388 575 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 16 575 - -
Gso6g2388 575 SUPERFAMILY RING/U-box 506 574 - -
Gso6g2388 575 ProSiteProfiles Zinc finger RING-type profile. 525 569 IPR001841 -
Gso6g2388 575 Pfam Ring finger domain 524 569 IPR001841 -
Gso6g2388 575 SMART ring_2 525 568 IPR001841 -
Gso6g2388 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 575 IPR013083 -
Gso6g2388 575 PANTHER RING ZINC FINGER PROTEIN 16 575 - -
Gso6g2388 575 SMART ringv_2 524 569 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2388 Gso-Chr6 45458205 45468180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2388 525 572 C3H Transcription Factor Family AT4G12190 39.583 7.65e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2388 K23788 - gmx:100802452 1169.07