Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2387 ATGGCCTCAGCTTCAGCATCTTATTCCTTTACCATCAGTGTGCTATTCCTCATTTTTGTGCACTTGTCATGTTTCATAAACAACCTCAATGCAAAGCACACCAATGCCAGCAGTCACAACCATCATCACAAACACCAACACACTCAGAATCCTTCCTTGAACACAAGGCTTCACATGGCGTTTCTTGGCCTACAAGCATGGAAGCAAGTGATCTACTCAGACCCAAATAACTTCACTTCCAACTGGGTAGGTCCTTCAGTTTGCAACTACACAGGTGTGTTCTGTGCTCCCTCACTTGATGACCCTAAAGTGACAGTTGTGGCTGGCATTGACCTTAACTTCGCAGACTTAGCAGGGTTCCTACCCAATGAAATAGGCCTTCTATCAGACCTTGCAGTCCTTCATCTCAGCAACAACCGTTTCTGTGGAATCCTCCCAAAGTCCTTCACAAACCTAACTCTACTCTATGAGCTTGATCTTAGCAACAACAGATTTGTAGGACCTTTTCCTTTGGTTGTGTTTTCCCTTCCTTTGCTCAAATACCTCGACCTTCGCTACAACGAGTTCGAAGGGCCGTTGCCTCCTCAACTCTTCAACAACACCATTGATGCAATCTTTGTTAACAACAACCGCTTCATAAGCACTATTCCACCAAACTTAGGAAAAATCTCAGCTTCTGTCCTTGTCTTTGCCAACAACAAATTTGGAGGGTGTCTTCCAGAAAGCATAGTGAACTTTGCTGACACTTTGGAGGAGCTTGTGCTAATCAACACAAGCTTGTCAGGGTGTTTGCCACAACAACTAGGGTTTCTCTACAAACTAAGAGTGTTGGATGTGAGTTTCAATAGCATTGTTGGCCCTATACCTTATAGCCTTTCAGGGTTGTCTCACTTGGAGCAATTGAATTTGGGGCATAACATGATGAGTGGCACTGTCCCTGTGGGGGTTTGTGAGTTGCCAAACTTGGCAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGTATTTGTAAGAACTTGACATCAAAGAGGATAGTGTTTGATGATAGGAGGAACTGTTTGCCAGAGAAGCCATTGCAGAGGAGTGAAAAGGAATGCAAGGCAAAACTTGAACACCCAGTTGATTGCTCTGAGCTTTGTTGTGTTGTTGGGAGCAATAATAATAATGTCTCTGCTGCTGGCTCAGTGGCTGTTCCACCTGCAGCAGCAGCAATGCCTGTGTCTGCACCTCTTCTTGCACCAAGCCACCCTTAA 1260 0.4476 MASASASYSFTISVLFLIFVHLSCFINNLNAKHTNASSHNHHHKHQHTQNPSLNTRLHMAFLGLQAWKQVIYSDPNNFTSNWVGPSVCNYTGVFCAPSLDDPKVTVVAGIDLNFADLAGFLPNEIGLLSDLAVLHLSNNRFCGILPKSFTNLTLLYELDLSNNRFVGPFPLVVFSLPLLKYLDLRYNEFEGPLPPQLFNNTIDAIFVNNNRFISTIPPNLGKISASVLVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQLGFLYKLRVLDVSFNSIVGPIPYSLSGLSHLEQLNLGHNMMSGTVPVGVCELPNLANFTFSYNFFCEEEGICKNLTSKRIVFDDRRNCLPEKPLQRSEKECKAKLEHPVDCSELCCVVGSNNNNVSAAGSVAVPPAAAAMPVSAPLLAPSHP* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2387 419 Gene3D Ribonuclease Inhibitor 62 226 IPR032675 -
Gso6g2387 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 418 - -
Gso6g2387 419 SMART LRR_typ_2 176 200 IPR003591 -
Gso6g2387 419 SMART LRR_typ_2 295 319 IPR003591 -
Gso6g2387 419 SMART LRR_typ_2 128 151 IPR003591 -
Gso6g2387 419 SMART LRR_typ_2 271 294 IPR003591 -
Gso6g2387 419 Pfam Leucine rich repeat 131 188 IPR001611 GO:0005515
Gso6g2387 419 Pfam Leucine rich repeat 249 307 IPR001611 GO:0005515
Gso6g2387 419 PANTHER EXTENSIN-LIKE PROTEIN 1 418 - -
Gso6g2387 419 SUPERFAMILY L domain-like 67 344 - -
Gso6g2387 419 Gene3D Ribonuclease Inhibitor 227 359 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2387 Gso-Chr6 45455345 45456980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2387 54 397 Trihelix Transcription Factor Family AT2G15880 53.198 5.70e-133 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2387 - - gmx:100802803 767.303