Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2384 ATGGCTGCTCAGAAGCGTTCCTTCCCTGATGCTCCTAACGATAACAACCGCCACGCCAAACATCACCACGAAGAAGCAAAAACTGAAGAAGAAGAAGAAGAAGAAGAAGAAGCACAACAACAACAACAGCATGATGAAGAAGAAGAAGAAGAGGATAATAATTACAAATCAGACGATTCTCCTCCCGAAGACAAATCCGAATATGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTAGGTATTATTAAGAAAACACGTACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCGATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGAACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCTTAATTGCAGCTTTATATCCTAATATTGAGAAGTATGAACAGGAGGAGCTTGAATTTCGTGAAGAGGACAAGAACCGCAATAAGCAGGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACGAAATGTTCTCTCTAGGAGACAAAACCAAGGGATGGATAATCAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCGGACCAGAGGTCGTCCTTCTCAGCCCTCATCATCGACGGCAAGTCCTGATGGTGGATGCATAGAAAGTGACATGGACATAAGAATTTCTTCTAGACTGGTGTCAAAACCTCAAAAACTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGCAGTAGTCGCTTGGCTAAGTTAGTTGATTATCTCCATAGCTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTTTAGACAAACAAATTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCTGTGAAGCATCTTTGTGAATATGTTGCTCATCAGACACCTTTGCTGGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTGTGACAAGTCATTTGATGAGACTTCATCCTCTGATGAGCTAACTAAGCTGGTTATAGATCCTAGCAAAGATGAACTGGAAACTCTGCAAGGGCATGAATCTCTGGCAGGGATTAAATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGAGGAAGGAATGA 1359 0.4275 MAAQKRSFPDAPNDNNRHAKHHHEEAKTEEEEEEEEEAQQQQQHDEEEEEEDNNYKSDDSPPEDKSEYVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIEKYEQEELEFREEDKNRNKQASIAKVVQRQSEALVKRRRDTPGSFVTRSQRNQRNVLSRRQNQGMDNQGSEDNEEENDNNEKDSSSTDERCTELRQRRRKRRTRGRPSQPSSSTASPDGGCIESDMDIRISSRLVSKPQKLTWGRGGFRSHTRHGSGNGSNSKSSRSSRLAKLVDYLHSLNENTDELDVHLILLSLDKQITPSLQQPHLCCRPTLSVKHLCEYVAHQTPLLVEEVEILAVKGCCSTVCDKSFDETSSSDELTKLVIDPSKDELETLQGHESLAGIKSKCISKREHLILAYRRKE* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2384 452 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Gso6g2384 452 CDD RING-HC_RING1_like 82 122 - -
Gso6g2384 452 Coils Coil 16 53 - -
Gso6g2384 452 MobiDBLite consensus disorder prediction 289 315 - -
Gso6g2384 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 145 IPR013083 -
Gso6g2384 452 MobiDBLite consensus disorder prediction 193 216 - -
Gso6g2384 452 ProSiteProfiles Zinc finger RING-type profile. 82 122 IPR001841 -
Gso6g2384 452 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 13 452 - -
Gso6g2384 452 MobiDBLite consensus disorder prediction 1 64 - -
Gso6g2384 452 MobiDBLite consensus disorder prediction 301 315 - -
Gso6g2384 452 MobiDBLite consensus disorder prediction 159 272 - -
Gso6g2384 452 SUPERFAMILY RING/U-box 70 136 - -
Gso6g2384 452 SMART ring_2 82 121 IPR001841 -
Gso6g2384 452 MobiDBLite consensus disorder prediction 11 28 - -
Gso6g2384 452 MobiDBLite consensus disorder prediction 29 57 - -
Gso6g2384 452 Pfam Zinc finger, C3HC4 type (RING finger) 81 121 - -
Gso6g2384 452 PANTHER OS11G0578200 PROTEIN 13 452 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2384 Gso-Chr6 45431049 45437888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2384 75 145 C3H Transcription Factor Family AT3G23060 35.135 6.68e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2384 K10695 - gmx:100801738 778.859