Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2381 ATGAGTAGTGTTTTTTCAGAACACAAATTCCAACTTCAACCCTCCCACCAACTTCTCTCCCTCAAGAAATCCCTCGGAGACATTGACATCCCAGTCCCACCAAGGAAGCTCCTCACCCGCCGCTCCGCCGCCGTCCACGACGGCTCCGGCGACATTTATCTGCCTCACAGTGGCTCCACTGACTCCTCCACCGACGATGACTCCGATGGCGACCCCTATGCCTCCGACCAATTCCGCATGTTCGAGTTCAAGGTCCGACGATGTAGTCGCAGCCGGAGCCATGATTGGACAGACTGTCCCTTTGTGCATCCCGGTGAGAAGGCCCGTCGTCGGGACCCTCGCCGGTTTTATTACTCTGGAACAGTCTGTCCAGAGTTTCGCCGCGGTCAGTGTGACCGCGGCGATGCATGTGAGTTTTCACATGGGGTGTTTGAGTGCTGGCTGCACCCTTCTAGGTATAGGACCGAGGCTTGCAAGGATGGCAAGAATTGCAAGCGAAAAGTTTGCTTCTTTGCTCACACCCCTCGCCAACTCAGGGTTTTTCATTCCAATGACAATAGTAACAAGAAAAAGTGCACCGATATAAGCCCTCATAATAACAACAATTGTTGTTTGGTTTGTCATTGCTCTAATTCTACTCGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCATTATCACCACCTTCTCCTTCTTCGCCTTCTATGTTTGAGACCAACAACCATCATCATGGTGTTGTGAAATATAATAAGGATGTTTTCTCTGAGCTTGTGTGTTCCATGGAGGGTTTGAATTTTGATGAGGCTTCTTCACTGTTGTCTGCTGCTTCTAAGCCTCATCATCACAACAATTTGTCTTCTTGGCTTGATGTTTCTAAGGATCACAATCAAAAACAGTTCAATACTCTTAATTCGCCAACCATCACTGCTTGTGGAAGCTTTTCCAATAATGGAAATGGGGGATTTTTGAGAGCAGAAAATGGGGTTGTTGTTGATGATGTCATTGCCCCAGATCTCGCATGGGTGAATGAATTGCTGATGTAG 1056 0.4782 MSSVFSEHKFQLQPSHQLLSLKKSLGDIDIPVPPRKLLTRRSAAVHDGSGDIYLPHSGSTDSSTDDDSDGDPYASDQFRMFEFKVRRCSRSRSHDWTDCPFVHPGEKARRRDPRRFYYSGTVCPEFRRGQCDRGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVFHSNDNSNKKKCTDISPHNNNNCCLVCHCSNSTRSPTSTLFGMSHFSPPLSPPSPSSPSMFETNNHHHGVVKYNKDVFSELVCSMEGLNFDEASSLLSAASKPHHHNNLSSWLDVSKDHNQKQFNTLNSPTITACGSFSNNGNGGFLRAENGVVVDDVIAPDLAWVNELLM* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2381 351 MobiDBLite consensus disorder prediction 48 74 - -
Gso6g2381 351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 46 350 - -
Gso6g2381 351 PANTHER UNKEMPT FAMILY MEMBER 46 350 IPR045234 -
Gso6g2381 351 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Gso6g2381 351 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Gso6g2381 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Gso6g2381 351 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Gso6g2381 351 Gene3D - 117 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2381 Gso-Chr6 45400785 45402313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2381 73 232 C2H2 Transcription Factor Family AT5G12850 48.750 1.31e-51 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso6g2381 zf-CCCH 5.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2381 K23047 - gmx:100800123 694.115