Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2380 ATGGTCAAGGAGAAGAAGAACGTGGTGGTCAAGAACAAGAAGCCAAACAACAATGCCGACGAGCTTCACTTCCGCGGCGTCCGGAAGCGACCATGGGGCCGCTACGCCGCCGAGATCCGTGACCCCGGCAAGAAGACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCCCGCGCCTATGACGCCGCCGCCCGCAACTTCCGCGGCCCCAAAGCCAAAACCAACTTCCCCGTGCCCCCCGACGACAACAACAACAACAACGTTAACGTGAACAAAAACAAGAGTGTTAACGTTAAATCTCACAGTCCCAGCCAGAGCAGCACCGTGGAGTCCGCCACCCCGGAGCGTGAAGCCACGCGCCGCTCCACCTCCGCCGCAATCGACCGTTTCCCGTTCCTACCCATCCAGCAGCAAATCCTCATGACCCACCCCGTCGCAGCACCCATGCGCCCGGTTTTCTTTCTCGACCGGGCCCACTTCATGACCCAGTCTTTCCCGCTCCGGTTCGAACCCGGTCCGGTCCAGAGCGACTCCGACTCCTCCTCCGTCGTCGTCGATTGTCAGCCCAAAAGAGAGCTCAATCTCGATCTTAACTTGGCTCCGCCTAATGAATATTAA 627 0.6029 MVKEKKNVVVKNKKPNNNADELHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEDAARAYDAAARNFRGPKAKTNFPVPPDDNNNNNVNVNKNKSVNVKSHSPSQSSTVESATPEREATRRSTSAAIDRFPFLPIQQQILMTHPVAAPMRPVFFLDRAHFMTQSFPLRFEPGPVQSDSDSSSVVVDCQPKRELNLDLNLAPPNEY* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2380 208 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Gso6g2380 208 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gso6g2380 208 MobiDBLite consensus disorder prediction 72 126 - -
Gso6g2380 208 MobiDBLite consensus disorder prediction 81 116 - -
Gso6g2380 208 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Gso6g2380 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 130 - -
Gso6g2380 208 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Gso6g2380 208 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gso6g2380 208 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Gso6g2380 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 130 - -
Gso6g2380 208 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Gso6g2380 208 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2380 Gso-Chr6 45382251 45383250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2380 21 205 AP2-EREBP Transcription Factor Family AT5G44210 49.479 1.09e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g2380 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2380 K09286 - gmx:100801924 330.102