Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2373 ATGCTTGCGGTGTCACCTTTGAGGAGCAATATCAAAGATGAAAAGAAGCAAGGAGAGATGGAGGGTAATTTCTCAATGGCAACAACAACAACAACCGATGATGTTGTCTTTGGTGACCTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTCGACGAACTCTTCGTCGGCATCGACATCCACGGAGATGTCTTGCCGGACTTGGAGATGTTCGGCGAGTTCTCCGTGGATGTCAGCACCGGCGAGGAATCGTCGGAGATGAACTCGTCGGCTAAAAGCAGCAAACTTGAGAACGATCAGAATGTCATCGCCACTACTTCAAAGAAAGAAGAGGAAGAAGATAAAACTTCTTGCAATGCTTCTGGTCAAGACTTGGGGTCAAACCGTGGAGAGGAGATTGTGAGCGAGAGAGATGAATCCGTGGTGGTGAATCCAGCACCAAAGGATGGTGGAAAAGGAAGAAAATCTTCTTCGGCTCAATCAAAGAATAATAGTAGTAGTAATAATAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTGCACAGACGATTCGTGCAAGCTGTGGAACAGCTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCACCTTCAAAAATATAGATCCCATAGGAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTGTGCTGGTGGAGGGAAGAGAGAAGGGAGTCCATGGTTAGCACCAACCATGGGTTTCCCTCCAATGACTCCCCCAATGCACCATTTTAGACCTTTACATGTATGGGGGCACCCTTCCATGGACCAGTCCTTCATGCATATGTGGCCTAAGCATCTTCCAAATTCACCACCACTCTCATGGCCGCCGCCGGCTGCACCGCCTCAAGAGCCTTCATTTTGGCACCAACTGGTTCCTAACGCACTAATCCCAGGAACAGCTTGTTTTCCACAACTTCTGACACCAACGAGATTTGGAAGTCCCCCTGTGCCCGGCATCCCACCCCATGCCATGTACAAAGCAGATCACGACATTGGCCTCCCTGGTCCCCTTTTCGACTTTTATCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCTTGGCTGCCTCTACCTATTGGACTTAAGGCTCCAGCGCTTGATAGTGTGATGAGTGAATTACAAAGACAAGGAATTCCAAACATTCCACCCTCTAGTGCTTGA 1284 0.479 MLAVSPLRSNIKDEKKQGEMEGNFSMATTTTTDDVVFGDLSEGNLLESINFDELFVGIDIHGDVLPDLEMFGEFSVDVSTGEESSEMNSSAKSSKLENDQNVIATTSKKEEEEDKTSCNASGQDLGSNRGEEIVSERDESVVVNPAPKDGGKGRKSSSAQSKNNSSSNNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLCAGGGKREGSPWLAPTMGFPPMTPPMHHFRPLHVWGHPSMDQSFMHMWPKHLPNSPPLSWPPPAAPPQEPSFWHQLVPNALIPGTACFPQLLTPTRFGSPPVPGIPPHAMYKADHDIGLPGPLFDFYPSKECIDAAIGDVLSKPWLPLPIGLKAPALDSVMSELQRQGIPNIPPSSA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2373 427 MobiDBLite consensus disorder prediction 79 103 - -
Gso6g2373 427 SUPERFAMILY Homeodomain-like 174 233 IPR009057 -
Gso6g2373 427 Pfam Myb-like DNA-binding domain 179 228 IPR001005 -
Gso6g2373 427 MobiDBLite consensus disorder prediction 154 175 - -
Gso6g2373 427 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 427 IPR044825 GO:0003700|GO:0045893
Gso6g2373 427 Gene3D - 173 234 - -
Gso6g2373 427 MobiDBLite consensus disorder prediction 1 21 - -
Gso6g2373 427 MobiDBLite consensus disorder prediction 79 178 - -
Gso6g2373 427 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 427 - -
Gso6g2373 427 MobiDBLite consensus disorder prediction 104 118 - -
Gso6g2373 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 232 IPR017930 -
Gso6g2373 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 176 230 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2373 Gso-Chr6 45301299 45306567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2373 1 358 G2-like Transcription Factor Family AT5G44190 41.192 2.85e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso6g2373 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2373 - - gmx:100799248 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2373 6 45301299 45306567 Gso12g1751 12 41113066 41117511 PCT
Gso6g2373 6 45301299 45306567 Gso11g3108 11 47000495 47004930 PCT