Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2371 ATGGGTGTGGATTACTACAAGATCTTGCAGGTTGATAGGAGCGCCAAAGACGATGACTTGAAGAAGGCTTATAGGAAACTTGCTATGAAATGGCACCCTGATAAGAACCCCAACAACAAGAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCCGAAGCATATGAGGTACTTAGTGATCCTCAAAAGAAAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAAGTTCCTCCTCCTGATGCTGGTGGTGCTGGAACTGGAACTACTTTCTTCTCCACAGGAGATATGCCGGGATCGTTTCGGTTCAATCCGAGGAATGCTGATGATATTTTTGCTGAGTTCTTTGGGTTCTCAAGCCCATTTGGTGGAATGGGTGGGAGAGGTGGTGGTGGTGGCGGTGGCGGCGGTGGCATGAGATCAAGGTTCCCTGGTGGGATGTTTGGTGATGATATGTTTGCATCTTTTGGGGAAGGAGGAGGAATACATATGAGTCAAGGTGCACCTCGGAAAGCTGCTCCCATTGAGAACAAATTGCCCTGCACTCTTGAGGAGATATATAAAGGGACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCAGATGCCAGTGGAAAAACCATGCCAGTAGAGGAAATCTTGACCATTAATGTCAAGCCTGGCTGGAAGAAAGGAACAAAGATCACATTCCCCGAGAAGGGAAATGAACAGCCAAACGTGACACCTGCAGACCTTGTTTTCATTATAGATGAGAAACCGCACAGTGTCTTCGCCCGCGATGGAAACGACCTTGTTGTAACCCAGAAGATTTCTCTTGCAGAGGCATTAACTGGTTACACAGTGCACCTCACTACCCTAGATGGTAGAAACCTAACCATACCAATCAACAATGTTATTCATCCCAATTATGAAGAGGTTGTTCCAAGAGAAGGAATGCCACTTCCAAAAGATCCATCAAAGAAGGGGAACTTGAGGATAAAGTTTAACATCAAGTTCCCAACTAGGCTCACTGATGAGCAAAAAGCAGGAATCAGGAAACTCTTCAACAATGCCTAA 1059 0.4495 MGVDYYKILQVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPDAGGAGTGTTFFSTGDMPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRGGGGGGGGGGMRSRFPGGMFGDDMFASFGEGGGIHMSQGAPRKAAPIENKLPCTLEEIYKGTTKKMKISREIADASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHSVFARDGNDLVVTQKISLAEALTGYTVHLTTLDGRNLTIPINNVIHPNYEEVVPREGMPLPKDPSKKGNLRIKFNIKFPTRLTDEQKAGIRKLFNNA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2371 352 CDD DnaJ_C 174 337 - -
Gso6g2371 352 Pfam DnaJ C terminal domain 176 334 IPR002939 -
Gso6g2371 352 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 349 - -
Gso6g2371 352 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 349 - -
Gso6g2371 352 SUPERFAMILY HSP40/DnaJ peptide-binding domain 257 343 IPR008971 GO:0006457|GO:0051082
Gso6g2371 352 CDD DnaJ 4 59 IPR001623 -
Gso6g2371 352 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gso6g2371 352 SUPERFAMILY HSP40/DnaJ peptide-binding domain 170 265 IPR008971 GO:0006457|GO:0051082
Gso6g2371 352 SMART dnaj_3 3 62 IPR001623 -
Gso6g2371 352 Gene3D DnaJ domain 3 127 IPR036869 -
Gso6g2371 352 Pfam DnaJ domain 4 67 IPR001623 -
Gso6g2371 352 SUPERFAMILY Chaperone J-domain 3 130 IPR036869 -
Gso6g2371 352 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gso6g2371 352 Coils Coil 346 352 - -
Gso6g2371 352 Gene3D - 255 335 - -
Gso6g2371 352 Gene3D - 175 253 - -
Gso6g2371 352 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gso6g2371 352 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gso6g2371 352 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gso6g2371 352 PRINTS DnaJ domain signature 62 81 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2371 Gso-Chr6 45267655 45270716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2371 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 9.57e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2371 K09510 - gmx:100797487 641.728