Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2370 ATGGAGGGTGTTTCTGAAGGAGAGAAGAAGAAGGAGCCAGTGGAAGGAGAGAATAAGAGCAAGCGCAAAATGAAGACGGCTTCACAGTTGGAAGTTCTGGAAAAAGCCTATGCTGCGGAGGCTTACCCTTCGGAGGCTTTGCGGGCTGAGCTATCCGTGAAGCTGAGTCTGTCTGATCGTCAATTGCAGATGTGGTTCTGTCACCGGAGACTGAAGGACCGAAATGCCAAGAAGCTGCAAAATGATTCATCCCTTGCGGGGGCTCCGGCGGTGGGTGAGGAGGGTGTTGAGCAAGTGACAGGGGCTGATGTTGGGCGTGATTGTGGTTTAGCTTCTGGGCCATTCGATCATCTGGATTCGCGGAAAATTGTTCCTCGGCCTGGGATGACGGCCTTTCCTAGTATGGGAGCTGGATTGCCAGCAGTGGTGGGCAGCAGTTACTATGAACCACCTCAGAACATGGATGTGCTGCAAGTTGTTGCATTTGTGGAAAGACAGTTGGGGGAGCCGATAAGAGAAGATGGACCCATCCTGGGGATGGAATTTGATTCTTTGCCGCCGGATGCATTTGGTGCACCAATAGGGATAGTGACAATGGGGCAACACAGGCAATGTGGAGGTCCTTTTGAGGCGAAAATTTATGAACAACTGGACAAGGATGTTTCAAGGACTCTGCACGAATACCAATTTATTCCAGAGAAGCCATCTGTTAGAAATGAGACATATGAGAGAGTTGCCCCCTCTATCCACTATAGTTCCCTTGATGGCATTCCACATTCTAGGACTTTATTATCTAGTGGACGATCTTTCCTCAATGGGAATGAATCTGCACCTTATGGATACGGAATTCAAGGTCATTTACCTGGTCTAAATCTTTTGTCTCGGCAAGGTAGGCAGAATCATCTTTTGCCATCTGCTTCAGGAGAAAATGATGGCATTCCACGAAAGAACCCATTTGTTGATGTAACAGCTGACATTCATAATGGGGCTCACCCAATAACTCTGATTGACAGCCCTCTAATGCCATCTGACGGGAGGGTTATCCACGTAGAGGAATTATCAAGGCTTCAAAGGAAGCGAAAGAATGATGACACTAAAATGCAACAAGAACTTGAAGCACAAGAGAGAAAAAATAGAAAAGAGCTTGAAAAACAGGATATTCTAAGGCAAAAGAGAGAAGAACAAACAAAGAAAGAAATGGAGAGACATGAACGTGAAAGGCAGAAGGAAGAGGAAAGGTTATTGCGTGAAAGGCAGAAGGAAGAGGAAAGGCTATTGCGTGAGAGACAGCGAGAGGAGGAGAGGTACCAAAGAGAACAGAGGCGTGAACAGGAACGGCGGCAGAAGTTTTTACAGAAGGAATCAATCAGAGCTGAGAAACTGAGACAGAAGGAAGAACTACGCAGGGAGAAAGAGGCAGCCAGGATCAAAGCTGCCAATGAGAGAGCTATTGCTCGCAGAATTGCTAAAGAATCAATAGAACTTATTGAAGATGAACGCCTGGAACTCATGGAGTTAGCTGCATCAAAGAAGGAACTCTCTTCGATACTGGCTCTTGACTATGAAACTATTCAAAATCTTGAATTCTATCGAGATGGACGGGCATCCTTCCCACCCAAGTCTGTACAGTTGAAAAGAATATTTTCAATTAAACCTTGGTCAGATTCTGATGAGAACGTGGGTAATCTTCTGATGGTTTGGAGGTTCTTGATTACCTTTGCTGATGTTCTTGGAATATGGCCATTTACCGTGGATGAACTTATACAAGCTTTTCATGACCATGACCCAAGGTTGTTAGGTGAGATTCATATTGCACTTCTGAAATCCATTATAAAAGATATTGAAGATGTTGCAAGAACACCCTCTACTGGGTTAGGATGCAACCAACACAGTGTTACAAACTCTGGTGGGGGGCATCCACAGGTAGTTGAAGGGGCCTATCTGTGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCCTTAACATGGCCAGAGATTTTGCGACAATTTGCTTTGTCAGCAGGATTTGGGCCCCAATTGAAGAAACTGAGTATTGAGCAGGTGCATCCTTGCAATAATAATGAGGGCAATGATGGTAGAGATATAATTTCTAATCTACGCAGTGGAGCAGCTGTTGAAAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAACCCCAGAAGATCTAGGCATTGTTTGACACCTGGAACTGTTAAATTTGCTGCATTTCATGTCCTTTCTCTTGAAGGAAGCAAAGGCCTTAATATATTAGAAGTTGCAGACAAGATTCAGAAATCTGGACTTCGTGATCTTACAACAAGCAAAACACCAGAGGCTTCTATTTCTGCTGCTTTGTCTAGGGATACAAAACTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGCATATAGAAAGGACCCAGCTGATTCTGAAGCAATTTATTCTGGTGCCAGGGAAAGAATCAGGATGTTCAAAAGTGGATTTGTGGAGGCAGAAGCTGCTGATAATGGTGAAAGGGATGAAGATTCTGAAAGCGATATGGAAGAAGATCCCGAGATTGATGATTTAGGAACTGAAACAAATGCAAAAAAGGAGAGTTCCAATTATGAGGGATTTAATGCAGACTCTGAGATGAGAAATAGAAAGGACAGCGTTGAGGTTTTGCAAACTCATGATACTAGCCTTGAGAAAGTGGGTGAGGATTTAGCTTCAATTGTTGCCAAAGACTTTAATGAACATAAAGATGTTAGTACCTCTAGTGGAATTGCTGTTTGCAACAATGATGTGGTTGATCCTAATGTCAAAGGAATAGCTGTTGATGAAAGCATTCCAGGTGAACCATGGATACAAGGGCTTACAGAGGGAGAGTACTCGGATCTTAGTGTAGTTGAGCGTCTTCATGCTCTTGTTGCTTTGATTGGTGTGGCAACTGAAGGAAATTCAATTCGTGTTGTACTTGAGGAACGTCTAGAAGCAGCAAATGCTTTAAAAAAGCAGATGTGGGCAGAAGCACAGCTTGATAAACGCCGTATCAAAGAGGATTACTTTGCTAAGATGCAGTCTGTCTCTTATTTGGACAAAACGAATGAGCTGACTGTTGTATTTCCCTCAGCAGATAGTAAACATAGCCCAGTGCTTATTGCTGATGATAAAAATAGTAAGGCTTTGCTCAATTCTCATGACCTGCATGAACAGAGCATTGAATTACAGGAAAATCAGAATCATCTTCAGAGTTCTCCATTAAAAGTCAATAAGCAGATGCAAGATTGTTCTACTGGCCCAGATAATTATTCTTTCCAACACTCAGGATATGTTGTTGAAAAATCAAGGTCAAATTTAAAGTCATACATTGGTCACTTGGCTGAGCAAACTTACATGTATAGGTCATTGCCTCTTGGTTTGGATCGAAGACGTAATCGATACTGGCAGTTCACAACATCTGCTCAAAATGATCCAGGTTGTGGCAGGATTTTTGTGGAGTTGAATGATGGTCGTTGGAAGTTGATTGATTCTGAAGAGGGTTTTGATGCTTTATTGGCTTCTTTGGATGTACGTGGGATTAGGGAGTCCCACTTGCATATGATGTTGCAAAGAATTGAGACGTACTTCAAAGAATTTGTTAGAAAGAATGCCCAAAATGTTAACATGAGAATGCAAAATGGAGACCCTGTCGAGAGACTCAAGACAGAATCTGTTGAAATGGCTTCAAACCAAGATTGCAGTGCTAATATTCATGGTTCTTCCTCTGTATGCATTGATAATCTGGATGCATCAGAGACCTCAACATCTTTTGTGGTTCAGCTTGGAAGAAATGAAGCTGATAACAAAGATGCTTGTATGAGATATTGGGACTTTGAGAAATGGATGCGAAAGGAATGTCTAAATTTCTCAGTACTTTCTGCAATGAAGTTTGGGAAGAAGTGGTGCCACCAACTGCAGTCCATATGTGATTTGTGCCTTCATGCCTATTTCTCTGGGGGAGCTCCATGCTCTTCCTGCTGTAGAACCTTCAGTGCTTGTAAGAGCAACCCTAGTTCTTCCAAACATATTGTTCATTCTGAAGGCAAAGTGAAGATTGACATTGATTGTTTTCATGCTTCGTCCTCATTGTCTTTGAGGATCAGATTGCTCAAAATCTTATTGTCAATTGTTGAGGTAACCCTTCCCCTAGAAGCTCTGCAACCTCTTTGGAGAGACAGCTGCAGGAAATCTTGGAGTACAAAGCTGGATGCTTCCTCATCAAGCGAAGACCTTCTTCAGATATTGACGGCATTGGAAGGTGCTATAAAGAGGGAGTATTTGGATTCAAACTATGAAACTACTTTTGAGCTGTTGGGTTTGTTTAGTGCTTCTGGATGTCACACTAAGGATTCCATTGATGGTGAAAGGATGTCTGTACTTCCATGGGTTCCATATACATCAGCTGCTGTAGCTCTAAGGCTCCTGCAACTTGATGCATGTATCTTTTACACCTCACAGCAGAAGCTGGAGTCTGAGAAGGATAAGAAAATTGGAATTGTGATGAAGCTTCCATCAAAACATGCTTCTGCCAGAAAATCTTACAATGCTGGTGCAATTGAAACTTCACATCAGGCTGAACGTGCTGTAGAGAACTGGGTTGATCTTGGAGCTGGTCTTACGAGCTGCAGCAGAGGACAAAGGACCCAACAGGGCCGTGGCCGTTCTCATGGTGGAAGAACATCATCAAAAAGGAGGGTGGTTAGTTCAAGATCCGGTTCTAAAAAGAGAAGCACTACCTCTAGAAGCAGGAAAATGGGAAAATTACTTGAATGGAAAGGGAGACCATGCAGACAAGGAGGAAATGCCCGTGGTCCTCGTAGCATTAGAAGCTGGCAGAAATCAGAAGCCAAGGTGGATGTGATCACTGGTGAGAGGGATACCCCAAAAGATGTCATGGAGGAAGCAGCTGGTATCTTTGTCCAAGAGGAGATTAATGAAGGTGAAATGGAAGCCGCTGCACTAAATGCTAGTAGTTCAGAGAGATCAGGCTATGAAGATGATGTTTATCAAGAAATAGGTGATGAGTATGATTATCTGGTGGACAATAATGATGGATATCAGGGTGTATTTAGTGGGAAGTCTGAGAACTTATTACATGGAAGCCACTATAATGTGGTTGGTAAGGAAGATATGGATATTGATGACAATGTTGACGATGATGATGACGACAACGGGAAAATTGATCTTGATGTTGAAGGTTACATAATTGGGGGCAACTCAGATGCAAGGGACAGGAAAGAAGAAAATGCAGAACAAAACATGGATCTGGATGGAGTTGGTTCTACATCATCAGACTATAGTGATTAA 5346 0.4276 MEGVSEGEKKKEPVEGENKSKRKMKTASQLEVLEKAYAAEAYPSEALRAELSVKLSLSDRQLQMWFCHRRLKDRNAKKLQNDSSLAGAPAVGEEGVEQVTGADVGRDCGLASGPFDHLDSRKIVPRPGMTAFPSMGAGLPAVVGSSYYEPPQNMDVLQVVAFVERQLGEPIREDGPILGMEFDSLPPDAFGAPIGIVTMGQHRQCGGPFEAKIYEQLDKDVSRTLHEYQFIPEKPSVRNETYERVAPSIHYSSLDGIPHSRTLLSSGRSFLNGNESAPYGYGIQGHLPGLNLLSRQGRQNHLLPSASGENDGIPRKNPFVDVTADIHNGAHPITLIDSPLMPSDGRVIHVEELSRLQRKRKNDDTKMQQELEAQERKNRKELEKQDILRQKREEQTKKEMERHERERQKEEERLLRERQKEEERLLRERQREEERYQREQRREQERRQKFLQKESIRAEKLRQKEELRREKEAARIKAANERAIARRIAKESIELIEDERLELMELAASKKELSSILALDYETIQNLEFYRDGRASFPPKSVQLKRIFSIKPWSDSDENVGNLLMVWRFLITFADVLGIWPFTVDELIQAFHDHDPRLLGEIHIALLKSIIKDIEDVARTPSTGLGCNQHSVTNSGGGHPQVVEGAYLWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKLSIEQVHPCNNNEGNDGRDIISNLRSGAAVENAVAIMQEKGLSNPRRSRHCLTPGTVKFAAFHVLSLEGSKGLNILEVADKIQKSGLRDLTTSKTPEASISAALSRDTKLFERTAPSTYCVRPAYRKDPADSEAIYSGARERIRMFKSGFVEAEAADNGERDEDSESDMEEDPEIDDLGTETNAKKESSNYEGFNADSEMRNRKDSVEVLQTHDTSLEKVGEDLASIVAKDFNEHKDVSTSSGIAVCNNDVVDPNVKGIAVDESIPGEPWIQGLTEGEYSDLSVVERLHALVALIGVATEGNSIRVVLEERLEAANALKKQMWAEAQLDKRRIKEDYFAKMQSVSYLDKTNELTVVFPSADSKHSPVLIADDKNSKALLNSHDLHEQSIELQENQNHLQSSPLKVNKQMQDCSTGPDNYSFQHSGYVVEKSRSNLKSYIGHLAEQTYMYRSLPLGLDRRRNRYWQFTTSAQNDPGCGRIFVELNDGRWKLIDSEEGFDALLASLDVRGIRESHLHMMLQRIETYFKEFVRKNAQNVNMRMQNGDPVERLKTESVEMASNQDCSANIHGSSSVCIDNLDASETSTSFVVQLGRNEADNKDACMRYWDFEKWMRKECLNFSVLSAMKFGKKWCHQLQSICDLCLHAYFSGGAPCSSCCRTFSACKSNPSSSKHIVHSEGKVKIDIDCFHASSSLSLRIRLLKILLSIVEVTLPLEALQPLWRDSCRKSWSTKLDASSSSEDLLQILTALEGAIKREYLDSNYETTFELLGLFSASGCHTKDSIDGERMSVLPWVPYTSAAVALRLLQLDACIFYTSQQKLESEKDKKIGIVMKLPSKHASARKSYNAGAIETSHQAERAVENWVDLGAGLTSCSRGQRTQQGRGRSHGGRTSSKRRVVSSRSGSKKRSTTSRSRKMGKLLEWKGRPCRQGGNARGPRSIRSWQKSEAKVDVITGERDTPKDVMEEAAGIFVQEEINEGEMEAAALNASSSERSGYEDDVYQEIGDEYDYLVDNNDGYQGVFSGKSENLLHGSHYNVVGKEDMDIDDNVDDDDDDNGKIDLDVEGYIIGGNSDARDRKEENAEQNMDLDGVGSTSSDYSD* 1782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2370 1781 Pfam DDT domain 558 613 IPR018501 -
Gso6g2370 1781 MobiDBLite consensus disorder prediction 358 414 - -
Gso6g2370 1781 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1134 1205 IPR028941 -
Gso6g2370 1781 MobiDBLite consensus disorder prediction 1570 1595 - -
Gso6g2370 1781 SMART HOX_1 18 80 IPR001356 GO:0003677
Gso6g2370 1781 MobiDBLite consensus disorder prediction 1752 1766 - -
Gso6g2370 1781 MobiDBLite consensus disorder prediction 1723 1781 - -
Gso6g2370 1781 MobiDBLite consensus disorder prediction 1725 1740 - -
Gso6g2370 1781 MobiDBLite consensus disorder prediction 1 27 - -
Gso6g2370 1781 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 951 993 IPR028942 -
Gso6g2370 1781 Coils Coil 453 484 - -
Gso6g2370 1781 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 427 - -
Gso6g2370 1781 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 416 1781 - -
Gso6g2370 1781 Pfam HB1, ASXL, restriction endonuclease HTH domain 739 806 IPR007759 GO:0006355
Gso6g2370 1781 MobiDBLite consensus disorder prediction 1556 1624 - -
Gso6g2370 1781 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 416 1781 IPR044977 GO:0006357
Gso6g2370 1781 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 427 IPR044977 GO:0006357
Gso6g2370 1781 CDD homeodomain 19 77 IPR001356 GO:0003677
Gso6g2370 1781 Pfam Homeodomain 19 75 IPR001356 GO:0003677
Gso6g2370 1781 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Gso6g2370 1781 MobiDBLite consensus disorder prediction 835 886 - -
Gso6g2370 1781 SUPERFAMILY Homeodomain-like 15 77 IPR009057 -
Gso6g2370 1781 MobiDBLite consensus disorder prediction 841 861 - -
Gso6g2370 1781 Gene3D - 14 84 - -
Gso6g2370 1781 ProSiteProfiles DDT domain profile. 557 616 IPR018501 -
Gso6g2370 1781 SMART testlast3 557 616 IPR018501 -
Gso6g2370 1781 Coils Coil 371 449 - -
Gso6g2370 1781 MobiDBLite consensus disorder prediction 426 448 - -
Gso6g2370 1781 ProSiteProfiles HARE-type HTH domain profile. 739 808 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2370 Gso-Chr6 45248284 45263166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2370 1 1779 Homeobox Transcription Factor Family AT5G44180 46.356 0.0 1320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso6g2370 WSD 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2370 - - gmx:100797480 3250.69