Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2360 ATGGATGAAGGAGAAATCATCACACATACTGCTTTCCCTCAGAACCTAACTGCTTCTGCTGCATCTAATGATCATAACAAACCTCCTTCTGCTTTGAGGAGGAAAAGAAACCTCCCAGGAAACCCAGATCCTGAAGCAGAAGTCATAGCCTTATCACCAAAGACCCTGATGGCTACGAACAGATTCTTGTGTGAAACTTGTGGGAAGGGTTTCCAAAGGGATCAAAATCTCCAACTCCATCGACGTGGACACAACCTTCCATGGAAGCTTAAACAGAGAACGGGTAAAGAAGCAAGAAAAAGGGTTTATGTGTGTCCTGAGAAGAGTTGTGTCCACCACGACCCTTCAAGGGCTCTTGGAGACTTAACTGGGATTAAAAAGCACTTCTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCGAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAGACCTGTGGCACTAGAGAATATAAATGTGATTGTGGAACTATCTTTTCAAGGAGAGACAGCTTCATCACACACAGGGCCTTCTGTGATGCATTGGCAGAAGAAACGGCTAGGGTAAATGCAGCCTCAGACATAAACACATCCTTAGGGGGCAACAACATTGGTTACAACATAATGGGAACATCCCTAGGCCCTAATATGGCAACCCATTTCCCTTCAATTTTCAAGCCAGTTTCAAGCACTGATGAAACAAGTAACCAAACCTCAAGGGGACTACCCCTTTGGATGAGTCAAATAACATCTTCTCAGGCTCAAGAAAGAATAATGGTCAACACAAATTTGCGTGAGATTCATCAACTTGGTTCTGCCACAAGCTCATCATCAGGAACAATATATGATGGCAACTCAATTCTCCAATGCCCAAATCTTCCACCTTCTAATAACTATCAACTAAGTTGGGTGTTTGGAACTAAAATTTCCAATAACAGTAACAACCAAGAGTTAACAACTAGCACTACTACTTCACTTCCTCTAGGAAACACAAGTGCCATTCCTTCTTGGTATAGTTCCCAACACCAACCTCAACATCAACAAGCATGTCCATCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAGCAACCTCAAGTGACCCTTCATGGCTTGGGAGCTTAGGTTTGAAATGTGGTAACAATAGCCAAGGTCAAGATGGTAATAATAATAAGTATAGTGGCATGTACGGATCAAGCTTGGTGCTCACAACCACTCTTGGGAGTGAAGCAGATAACTCTGGATGTGAATTGTCACAAATGCACCCTCACAAACGAAGACACGTGCTCAATGAAGAAAGTGGAGGGGGGCAAACTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTTCCACACTTCATCAACCAAGGGGTGGACTTGATTTGA 1425 0.4372 MDEGEIITHTAFPQNLTASAASNDHNKPPSALRRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASDINTSLGGNNIGYNIMGTSLGPNMATHFPSIFKPVSSTDETSNQTSRGLPLWMSQITSSQAQERIMVNTNLREIHQLGSATSSSSGTIYDGNSILQCPNLPPSNNYQLSWVFGTKISNNSNNQELTTSTTTSLPLGNTSAIPSWYSSQHQPQHQQACPSANMSATALLQKAAQIGATSSDPSWLGSLGLKCGNNSQGQDGNNNKYSGMYGSSLVLTTTLGSEADNSGCELSQMHPHKRRHVLNEESGGGQTRDFLGVGVQNHFPHFINQGVDLI* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2360 474 MobiDBLite consensus disorder prediction 18 44 - -
Gso6g2360 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 473 - -
Gso6g2360 474 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Gso6g2360 474 PANTHER F-BOX ASSOCIATED PROTEIN 30 473 - -
Gso6g2360 474 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Gso6g2360 474 Gene3D Classic Zinc Finger 95 186 - -
Gso6g2360 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Gso6g2360 474 Gene3D Classic Zinc Finger 58 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2360 Gso-Chr6 45109553 45112778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2360 29 460 IDZ Gene Family AT1G03840 49.687 6.29e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g2360 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2360 K25870 - gmx:100790620 956.822