Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2354 ATGGAAGCCCAAAGAGATGAGCGTGTCTCAAAACTACTTGGAGCTCAAACCCATGTTTGGAATCACATTTTCAGCTTCATAAATTCCATGTCCCTCAAATGTGCAATTGAGTTGGACATACCTGATATCATACACAAGTATGGTCAACCCATGCCACTCTCAAAACTCACTACTTCACTATCAATCCACCCTTCCAAAGCCAATTGCATATATCGCTTGATGCGAATTTTGACCCATTCTGGCTTCTTCTCTCAACACAAGGTCAACGAGAATGAGCTAGAAATGGGTTACGTGTTGACCGATGCATCTACTCTACTACTTAAGGACAACCCCTTAAGTATGGTACCTTTCTTGCATGCAATGCTTGATCCAACTTTGACACAGCCATGGCTTCAATTGCCAACATGGTTCAAAAATGATGATCCCTCGCCATTTCAAACAGCACATGGGATGAAAATTTGGGATTATGCTGACCGCGAGCCAAGGCTTAATGACCTTTTTAATGATGCTATGGCAAGTGACACTCAATTGGTTGCCAATGTGGTGATTGAGAGGTGCAAAGGAGTGTTCAATGGATTGGAGTCACTTGTTGATGTTGGGGGTGGCACAGGTACTATGGCAATGGCTATTGCCAAATCATTCCCACAACTAGAGTGTACGGTGTTTGATCTTCCACATGTTGTTGCCACTTTACAAGGAAGTGAGAACTTGAAATATGTTGGAGGGGACATGTTTGAGTCAATTCCTTCTGCTGATGCCATTCTCTTGAAGTGGATATTGCATGACTGGAATGATGAGCAGTGTGTGAAAATACTGAAGAAATGCAAAGAGGCAATAAAGAGCAAGGTGATTATCATAGACATGGTGGTGGAGAATGAAAAGGGAGATGATGAATCAATTGAAACACAGCTCTTCATTGATATGGTTGTGATGGTGCTGTATCCTGGAAAAGAGAGAACTGAGAAAGAATGGGCCAAACTGATTTTCTCTACTGGTTTCAGTGACTACAAGATAACTCCAGTGTTGGGTTTAAGGTCTCTCATTGAGATTTACCCATAA 1059 0.4202 MEAQRDERVSKLLGAQTHVWNHIFSFINSMSLKCAIELDIPDIIHKYGQPMPLSKLTTSLSIHPSKANCIYRLMRILTHSGFFSQHKVNENELEMGYVLTDASTLLLKDNPLSMVPFLHAMLDPTLTQPWLQLPTWFKNDDPSPFQTAHGMKIWDYADREPRLNDLFNDAMASDTQLVANVVIERCKGVFNGLESLVDVGGGTGTMAMAIAKSFPQLECTVFDLPHVVATLQGSENLKYVGGDMFESIPSADAILLKWILHDWNDEQCVKILKKCKEAIKSKVIIIDMVVENEKGDDESIETQLFIDMVVMVLYPGKERTEKEWAKLIFSTGFSDYKITPVLGLRSLIEIYP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2354 352 Gene3D - 2 106 IPR036388 -
Gso6g2354 352 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Gso6g2354 352 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Gso6g2354 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Gso6g2354 352 PANTHER O-METHYLTRANSFERASE 9 352 - -
Gso6g2354 352 CDD AdoMet_MTases 196 291 - -
Gso6g2354 352 Pfam O-methyltransferase domain 130 334 IPR001077 GO:0008171
Gso6g2354 352 PANTHER O-METHYLTRANSFERASE 9 352 IPR016461 GO:0008168
Gso6g2354 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 352 IPR016461 GO:0008168
Gso6g2354 352 Gene3D Vaccinia Virus protein VP39 107 352 IPR029063 -
Gso6g2354 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 350 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2354 Gso-Chr6 45006035 45007767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2354 30 338 Monolignol Biosynthesis Gene Families AT5G54160 35.127 1.28e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2354 - K16040 gmx:100794122 704.516