Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2347 ATGGCTTCCAACAACAACAGCAGCAGCAGCAGCAGCAGCATCATCGTCCAACATTGCAACTACTCTTCATATGACGTGTTTGTGAGCTTCAGAGGTAAGGACACACGCAACAATTTTACTGATCATCTTTTTGGTGCATTCCATAGGAAAAAAATTCGTACATTTAGGGATGACACAAGGCTGAAGAAAGGGGAACGTATACTATCCAACCTCATGCAAGCAATTGAGGGGTCTCAGATTTTTGTCATTGTCTTCTCAAAGAACTATGCTTTTTCATCATGGTGCTTGAAAGAACTTGCTAAGATCCTTGATTGTGTTAGAGTCTCCGGAAAACATGTTCTGCCTATTTTTTACGATGTTGATCCATCTGAAGTGCGAAATCAGACGGGGGATTATGAGAAAGCCTTCGCCAAACACGAAGATAGAGAGAAGATGGAGGAAGTGAAAAGATGGAGAGAAGCTCTCACACAAGTAGCCAATCTCGCTGGTTGGGATATGAGGAATAAGTCACAATATGCTGAGATTGAAAAAATTGTTCAAGAGATAATAAGTAAATTGGGTCACAATTTTTCAAGTCTTCCAAATGATCTAGTTGGGATGGAATCTCCTGTTGAAGAATTAGAAAAACTTTTACTTTTGGACCTAACTGATGATGTTCGCATTGTAGGAATTTGTGGGATGGGTGGAATAGGAAAGACAACTCTTGCTACTGTTTTATATGATAGAATCTCTCATCAATTTGATGCTCACTGTTTCATTGATAATGTAAGCAAAACTTATAGACATTGTGGCCAAATTGGTGTTCTAAAGCAGCTGCTTCATCAAACTCTAAATGAAGACCTTCAGATATGCAATCTTTACCACGCAGCTAATTTGATGCAAAGTAGGCTACGCTATGTAAAGAGCATTATAGTTCTTGATAATGTTAATGAAGTTGAACAACTAGAGAAATTAGTTTTGAATCGTGAATGGTTAGGTGCAGGGAGTAGAATCATCATAATTTCTAGAGACAAGCATGTCTTGAAAAAGTGTGGAGTGACTGTAGTCTACAAAGTTCAACTCTTGAATGGTGCTAATTCTCTTAAATTGTTCTGTAAAAAAGCTTTCGATTCTGTTGATATCACGGGAGATTATGAAGAGTTGAAATATGAAGTCTTAAAATATGCCAATGACCTACCACTAGCAATTAAAGTACTAGGTTCGGTTTTGTCTGGTCGAAGTGTCTCATATTGGAGAAGTTACTTGGATAGACTTAAAGAGAATCCTAACAAAGATATTCTGGATGTGCTTCGAATTAGTTATGATGAACTTCAGGATTTGGAAAAGGAAATATTTTTAGATATTGCTTGTTTCTTCTGTGGAAACGAAGAATTATATGTGAAGAAAGTTTTAGATTGTTGTGGGTTTCATTCTGAAATTGGAATAAGAGCCCTCGTTGATAAATCACTCATAGATAATTCAAGTGGATTCATTGAAATGCATAATTTGTTGAAAGTTTTAGGCAGAACAATTGTTAAAGGCAATGCACCCAAAGAGCCAGGAAAGTGGAGCAGGGTTTGGCTCCACGAAGATTTCTACAATATGTCGAAGGCAACGGAAACAACAAACAATGAAGCCATTGTTTTAGACAGAGAGATGGAAATATTGATGGCTGGTGCTGAAGCATTGTCCAAAATGAGCAACCTTAGGTTGCTCATATTCCGTGATGTGAAGTTTATGGGAATACTTAATTCAGTTAATTGTCTCTCCAATAAACTACAATTTCTTGAGTGGTATAACTATCCTTTCTCCTATTTGCCATCAAGTTTTCAGCCGAACCTGCTGGTTGAATTGATCTTGCAACATAGCAACATCAAACAATTATGGAAAGGCATAAAGCATCTGCCAAATTTAAGAGCTTTGGATCTCAGTTACTCCAAGAATCTTATTGAGGCTCCAGACTTTGGAGGGGTCCTTAATCTTGAGTGGATAATTCTTGAAGGATGCACAAATCTTGCACGGATCCATCCATCAGTTGGACTTCTAAGAAAACTTGCTTTCTTGAATTTGAAAAACTGCATTAGTCTAGTAAGTCTACCCAGCAACATATTGAGTCTAAGTTCTCTTGGATATCTAAATATCTCTGGCTGTCCAAAAGTATTTAGTAATCAGCTGTTAGAGAAACCAATACATGAGGAGCATTCTAAGATGCCTGATATCAGGCAAACTGCCATGCAATTTCAATCAACATCCTCCTCCATCTTCAAGAGACTTATTAATTTAACTTTCCGTTCCTCCTACTATTCTAGAGGGTATAGAAATTCAGCTGGTTGTTTGTTGCCTTCCTTGCCTACCTTCTTTTGTATGCGTGACCTTGATCTAAGTTTCTGCAATCTAAGCCAAATCCCTGATGCTATTGGATCCATGCATTCTTTAGAAACCTTGAATTTAGGGGGAAACAACTTTGTTAGCCTCCCTTATAGCATCAACCAGCTTTCAAAACTTGTACATTTAAACTTGGAGCATTGTAAGCAATTGAGATATTTTCCTGAGATGCCATCACCTACTTCCTTGCCCGTAATAAGAGAAACCTACAACTTTGCTCATTACCCTAGGGGATTATTTATTTTTAACTGTCCTAAAATAGTTGACATTGCACGTTGTTGGGGCATGACTTTTGCATGGATGATACAAATTCTTCAGGTTAGCCAAGAATCAGATACCCGTATTGGTTGGATTGACATTGTTGTTCCGGGAAATCAAATACCAAAATGGTTCAACAATCAAAGTGTTGGTACTTCAATAAGCCTAGACCCATCTCCCATTATGCATGGCAATCATTGGATTGGCATTGCTTGCTGCGTGGTATTTGTGGCATTTGATGATGCAACTGATTTGCATCCGAATTTGAGATCCTCTATAAGAATTGGTTTTAAAACAGAGTCCTACTCTTCCTCTCTTGATATTCCTATACTTATTAATAAGGATCTAGTAACGGTCGGATTGCATCACTTGTGGCTACTCTATTTGAGTAGGGAGGAGTTTTTTTTCCTATTTTAA 3039 0.3778 MASNNNSSSSSSSIIVQHCNYSSYDVFVSFRGKDTRNNFTDHLFGAFHRKKIRTFRDDTRLKKGERILSNLMQAIEGSQIFVIVFSKNYAFSSWCLKELAKILDCVRVSGKHVLPIFYDVDPSEVRNQTGDYEKAFAKHEDREKMEEVKRWREALTQVANLAGWDMRNKSQYAEIEKIVQEIISKLGHNFSSLPNDLVGMESPVEELEKLLLLDLTDDVRIVGICGMGGIGKTTLATVLYDRISHQFDAHCFIDNVSKTYRHCGQIGVLKQLLHQTLNEDLQICNLYHAANLMQSRLRYVKSIIVLDNVNEVEQLEKLVLNREWLGAGSRIIIISRDKHVLKKCGVTVVYKVQLLNGANSLKLFCKKAFDSVDITGDYEELKYEVLKYANDLPLAIKVLGSVLSGRSVSYWRSYLDRLKENPNKDILDVLRISYDELQDLEKEIFLDIACFFCGNEELYVKKVLDCCGFHSEIGIRALVDKSLIDNSSGFIEMHNLLKVLGRTIVKGNAPKEPGKWSRVWLHEDFYNMSKATETTNNEAIVLDREMEILMAGAEALSKMSNLRLLIFRDVKFMGILNSVNCLSNKLQFLEWYNYPFSYLPSSFQPNLLVELILQHSNIKQLWKGIKHLPNLRALDLSYSKNLIEAPDFGGVLNLEWIILEGCTNLARIHPSVGLLRKLAFLNLKNCISLVSLPSNILSLSSLGYLNISGCPKVFSNQLLEKPIHEEHSKMPDIRQTAMQFQSTSSSIFKRLINLTFRSSYYSRGYRNSAGCLLPSLPTFFCMRDLDLSFCNLSQIPDAIGSMHSLETLNLGGNNFVSLPYSINQLSKLVHLNLEHCKQLRYFPEMPSPTSLPVIRETYNFAHYPRGLFIFNCPKIVDIARCWGMTFAWMIQILQVSQESDTRIGWIDIVVPGNQIPKWFNNQSVGTSISLDPSPIMHGNHWIGIACCVVFVAFDDATDLHPNLRSSIRIGFKTESYSSSLDIPILINKDLVTVGLHHLWLLYLSREEFFFLF* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2347 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 448 IPR027417 -
Gso6g2347 1012 Pfam NB-ARC domain 202 426 IPR002182 GO:0043531
Gso6g2347 1012 Pfam Leucine rich repeat 783 837 IPR001611 GO:0005515
Gso6g2347 1012 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 164 IPR035897 -
Gso6g2347 1012 Gene3D - 172 350 IPR027417 -
Gso6g2347 1012 SMART till_3 23 161 IPR000157 GO:0007165
Gso6g2347 1012 Gene3D Ribonuclease Inhibitor 732 863 IPR032675 -
Gso6g2347 1012 SUPERFAMILY L domain-like 509 876 - -
Gso6g2347 1012 Gene3D - 355 438 IPR042197 -
Gso6g2347 1012 Pfam TIR domain 24 192 IPR000157 GO:0007165
Gso6g2347 1012 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 194 1009 - -
Gso6g2347 1012 Pfam C-JID domain 910 953 IPR045344 -
Gso6g2347 1012 Pfam Leucine Rich Repeat 608 626 IPR011713 -
Gso6g2347 1012 Gene3D Ribonuclease Inhibitor 548 727 IPR032675 -
Gso6g2347 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 194 1009 IPR044974 GO:0006952
Gso6g2347 1012 ProSiteProfiles TIR domain profile. 22 186 IPR000157 GO:0007165
Gso6g2347 1012 Gene3D - 1 159 IPR035897 -
Gso6g2347 1012 PRINTS Disease resistance protein signature 221 236 - -
Gso6g2347 1012 PRINTS Disease resistance protein signature 296 310 - -
Gso6g2347 1012 PRINTS Disease resistance protein signature 389 403 - -
Gso6g2347 1012 PRINTS Disease resistance protein signature 626 642 - -
Gso6g2347 1012 ProSiteProfiles Leucine-rich repeat profile. 804 825 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2347 Gso-Chr6 44926968 44931577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2347 24 831 WRKY Transcription Factor Family AT4G12020 30.639 1.97e-85 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2347 - - gmx:100786903 1985.3