Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2344 ATGGTGGGTCCCATTATTCGTTCTCTCTGGTCCTCCACCAGAAAATCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTCCCTCTCCTCCGTTATCCCACTCGCGCTTCTTCTCACGCGCCTTCGCCGCCGCTCCCGCCACTGCCCCTGCCGCAGCAACCACCGCCTCCTCCCTCGACCCCAGCCGCCTCCGCAACCTGGCCGTGATCGCTCATGTCGACCACGGCAAGACCACCCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGGTCACGTCTGTTTCGTGGAAGGAGAATGAGCTGAACATGGTTGATACTCCCGGGCACGCCGATTTTGGTGGTGAGGTTGAGCGAGTTGTTGGTATGGTTGAGGGAGCGATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACGAAATTTGTTCTTGCAAAGGCCTTGAAGTACGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTGCAGTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAGAGGAGCAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAGGGATGGGCGTCTACTACATTTACCAAGGATCCTCCTGCTGATGCCAGAAATATGTCACAGTTGCTTGATGCCGTTGTAAGACATGTTCCACCACCAAATGCAAACATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAAAAAGATTTCTATCTTGGGCGAATTTTGACTGGACGCATATTCTCTGGGGTTGTTCGTGTTGGTGACAAGGTTCATGGATTACGTAATAAAGATTCTGGTGCTGAAAAAATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATTTCAATTGCTGGCCTGTCAAGTCCAGCAATAGGCCATACAGTGGCAACTGTGGAGATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTGGCTGGCCGTGATGGCACTCATTTGACTGGGGGGAGAATTGGTGACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATGTATAAAACTGAAAGCGGTCAGAAGCTTGAGCCTGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGATAATGGAGGCCTTGTCTCATAGACGAGCAGAGGTTACAGACATGGGTCCTGTTTCAGGAACTGTTGGTCGAACTAGATTGTGTTTGACTTGTCCATCAAGGGGCCTGGTCGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGCATATGAAAAATTTCGAGGCCCGCTTGGCAATGTCAGGAAAGGAGTACTGGTTTCAATGGGTTTTGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGAGGGACTCTTTTTGTAACTCCTGGAATGGAGGCGTATGATGGAATGATTGTTGGAGAACATTCACGCGATACAGATCTTGATGTCAATCCTGTAAGGGCTAAAGAACTTACAAATATCCGTGCTGCTACCAAAGATGATAATGTGAAGCTGACTCCCCCTCGCCTTATGACACTTGAAGAAGCTATAGGGTATGTAGCTTCCGATGAACTTATTGAGGTTACACCAAAATCCATCCGTTTGAGGAAGAAATACCTTGATGTTAACAAGCGTAAAGCCATGAGTAAAAAGCCAAAGGAATGA 2019 0.4755 MVGPIIRSLWSSTRKSFSSSSSSSSFSPSPPLSHSRFFSRAFAAAPATAPAAATTASSLDPSRLRNLAVIAHVDHGKTTLMDRLLRQCGADLPHERAMDSISLERERGITISSKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPADARNMSQLLDAVVRHVPPPNANIDAPFQMLVSMMEKDFYLGRILTGRIFSGVVRVGDKVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISIAGLSSPAIGHTVATVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTESGQKLEPVEEVTIEVNDEHVGLIMEALSHRRAEVTDMGPVSGTVGRTRLCLTCPSRGLVGYRSVFSSDTRGTGFMHRAFHAYEKFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGTLFVTPGMEAYDGMIVGEHSRDTDLDVNPVRAKELTNIRAATKDDNVKLTPPRLMTLEEAIGYVASDELIEVTPKSIRLRKKYLDVNKRKAMSKKPKE* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2344 672 CDD BipA_III 371 448 - -
Gso6g2344 672 Gene3D - 62 260 IPR027417 -
Gso6g2344 672 TIGRFAM small_GTP: small GTP-binding protein domain 65 206 IPR005225 GO:0005525
Gso6g2344 672 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 99 114 IPR031157 -
Gso6g2344 672 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 260 IPR000795 GO:0003924|GO:0005525
Gso6g2344 672 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 7 671 - -
Gso6g2344 672 CDD BipA_TypA_C 463 543 IPR035651 -
Gso6g2344 672 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Gso6g2344 672 PRINTS GTP-binding elongation factor signature 106 114 IPR000795 GO:0003924|GO:0005525
Gso6g2344 672 PRINTS GTP-binding elongation factor signature 126 136 IPR000795 GO:0003924|GO:0005525
Gso6g2344 672 PRINTS GTP-binding elongation factor signature 142 153 IPR000795 GO:0003924|GO:0005525
Gso6g2344 672 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Gso6g2344 672 Pfam Elongation factor Tu GTP binding domain 63 257 IPR000795 GO:0003924|GO:0005525
Gso6g2344 672 Pfam Elongation factor Tu domain 2 281 354 IPR004161 GO:0005525
Gso6g2344 672 PANTHER ELONGATION FACTOR FAMILY PROTEIN 7 671 - -
Gso6g2344 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 269 IPR027417 -
Gso6g2344 672 Gene3D bipa protein 549 664 IPR042116 -
Gso6g2344 672 CDD BipA_TypA_II 267 364 - -
Gso6g2344 672 Gene3D Elongation Factor G (Translational Gtpase), domain 3 372 656 - -
Gso6g2344 672 Gene3D Translation factors 261 365 - -
Gso6g2344 672 SUPERFAMILY EF-G C-terminal domain-like 463 579 IPR035647 -
Gso6g2344 672 Pfam Elongation factor G C-terminus 461 544 IPR000640 -
Gso6g2344 672 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 64 664 IPR006298 GO:0005525
Gso6g2344 672 SUPERFAMILY EF-G C-terminal domain-like 369 452 IPR035647 -
Gso6g2344 672 CDD TypA_BipA 64 259 - -
Gso6g2344 672 Gene3D - 454 548 - -
Gso6g2344 672 SUPERFAMILY Translation proteins 209 364 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2344 Gso-Chr6 44899325 44909353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2344 63 187 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 3.99e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2344 K06207 - gmx:100789218 1227.23